Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02969 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGCAACAGGCCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACACAATATAAATAGACAATCTGGTAGTGTACATGCATCTCCTGGTCCTGGACGTACAAAAAAGATTTTTGTTGGAGGTTTACCGTCAACTGTCACGGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGTTTCATTACATATGATTCAGAAGAAGCTGTGGATAGAGTTCTTTTTAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAACTATAGTTTGAATAGGGCCAGTAGCTACCTAAATAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTGCTAGTGGTAGAACTGGATTCTCTCCTTTTGGCAACACTGGTTATGGAATGGGGATGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGAAATTCTAATTATGGGAACAATTTAGGATATGGTCGAATATTTAGTCCTTTCTATGGTGGCAACTCAAACAGATATACCACTCCTATAGGCTATAATGGGGGTAATGGGAGAAACGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCAGTCAGCCCTGGTGCTTTCTTGGGATCTGGAAGCGGGACTTTTGGTGTTTCAATTGGAAATAGTGGCACAAATTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACAGGTGTGACTCCATCCTCTACATTTAATGCATCATCTGGTGGTTATGATGGTTCCTATGGAGACTTGTACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGGTCTGCTGCTTCTGAGATAGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACAAGTAGGCAATCTAATAGAGATTCTTGA 1434 0.4303 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHNINRQSGSVHASPGPGRTKKIFVGGLPSTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYSLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLASGRTGFSPFGNTGYGMGMNLDSGLSPSFGGNSNYGNNLGYGRIFSPFYGGNSNRYTTPIGYNGGNGRNDSLMNSTSRNVWGNGGLNNANNPVSPGAFLGSGSGTFGVSIGNSGTNWGPSIPAQGGGAASGYATGSNVYEGGDSSFGLGGGGYGRNSSTGVTPSSTFNASSGGYDGSYGDLYRSGSGSVYNDSTWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQSNRDS. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02969 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca6g02969 477 MobiDBLite consensus disorder prediction 454 477 - -
Seca6g02969 477 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Seca6g02969 477 Gene3D - 103 189 IPR012677 -
Seca6g02969 477 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Seca6g02969 477 MobiDBLite consensus disorder prediction 462 477 - -
Seca6g02969 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca6g02969 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Seca6g02969 477 CDD RRM2_Hrp1p 107 184 - -
Seca6g02969 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Seca6g02969 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Seca6g02969 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 164 IPR000504 GO:0003723
Seca6g02969 477 Gene3D - 6 88 IPR012677 -
Seca6g02969 477 MobiDBLite consensus disorder prediction 80 102 - -
Seca6g02969 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca6g02969 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Seca6g02969 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Seca6g02969 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02969 Seca-Chr6 95645028 95648644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02969 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.719 2.10e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02969 K14411 - gmx:100805131 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02969 6 95645028 95648644 Seca6g02969 6 95645028 95648644 ECH