Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02968 ATGATGCCTAGTGTTAAGCCTGATCAATCTGACAAAGACGCAGAACCATTTGTTGAAATTGATCCAACTGGAAGATATGGTAGATACAGTGAACTATTGGGATCAGGTGCTGTGAAAAAAGTGTATAGGGCATTTGATCAAGAAGAAGGGATAGAGGTGGCTTGGAACCAAGTGAAACTTAGGAACTTCAGTGATGACCCTGCCATGGTGGAAAGGCTTTACTCTGAAGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATTGCCCTTTATAGTGTTTGGAGGGATGAGCAACATAACACTCTGAATTTCATCACTGAGGTTTGCACCAGTGGGAATTTGAGGGAGTACAGGAAGAAGCACAAGCATGTGTCCATCAAGGCTCTGAAGAAGTGGTCAAAGCAGATTTTGGAAGGGTTGAATTATTTGCATCTGCATGACCCCTGTATCATTCATAGAGACCTCAATTGCAGCAATGTCTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTTGGTTTGGCAGCAATTGTGGGCAAGAACCACTCTGCACATTCAATTCTTGGGACACCAGAATTTATGGCACCTGAGTTATATGATGAGGACTACACAGAAATGGTGGACATATACTCATTTGGGATGTGTGTGTTAGAGATGGTAACACTAGAGATTCCTTATAGTGAGTGTGACAATGTTGCCAAGATATACAAGAAGGTGTCTTCAGGTCTGAGACCACAGGTCTTGAACAAGATAAAAGATGCAGAGGTGAAGGCCTTCATTGAGAGATGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCTGCTGAGTTGCTTAAGGACCCTTTCTTTGATGTGCTTGATTATGATCAAAATGATGACTCTGCTAGCTAG 897 0.4281 MMPSVKPDQSDKDAEPFVEIDPTGRYGRYSELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVERLYSEVRLLRSLTNKNIIALYSVWRDEQHNTLNFITEVCTSGNLREYRKKHKHVSIKALKKWSKQILEGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDFGLAAIVGKNHSAHSILGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGLRPQVLNKIKDAEVKAFIERCLAQPRARPSAAELLKDPFFDVLDYDQNDDSAS. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02968 298 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02968 298 CDD STKc_WNK 25 285 - -
Seca6g02968 298 SUPERFAMILY Protein kinase-like (PK-like) 23 286 IPR011009 -
Seca6g02968 298 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
Seca6g02968 298 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02968 298 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 286 - -
Seca6g02968 298 PIRSF TyrPK_CSF1-R 119 282 - -
Seca6g02968 298 PIRSF TyrPK_CSF1-R 26 132 - -
Seca6g02968 298 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Seca6g02968 298 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Seca6g02968 298 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02968 Seca-Chr6 95559490 95561111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02968 1 286 MAP Kinase Kinase Kinase AT5G55560 81.379 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca6g02968 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02968 K08867 - gmx:100782039 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02968 6 95559490 95561111 Seca6g02968 6 95559490 95561111 ECH
Seca6g02968 6 95559490 95561111 Seca6g02968 6 95559490 95561111 PCT