Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02965 ATGCAAACTTCTCAGAAACATGAAATTACTTATGGCTCTGGCAGGTTCTATGTTGAGCCTGTACAAAATCTGGAGTCATATTGCTTTCCTTCAAGTGAGAACCTAGAGAATTACTGTTCCTCTGATAACAGTTGCCAAACAACCTATCCTTCTGTCCAGACTTTAGAACAATATGGCACCCTTGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTGCTGTCAGTTTCTCATCTAACAATAGTCCAGTGTCAAAGGTAGAGTCAAACTCATATGTGTTAAGGCCACAGAATTCTCTTGAAATTGTTAATGGCTCACCTGAAGATGATTCTTACTTGACACATGACCTTGATGACCTGACACATAAGATAAGAGAACTGGAAACTGCTATGCTGGGACCTAATGCAGATGTGCTAGATATATATGATGCTGTAATTCCAGAAGAATCTGATTCATTTTTGTTGGAGGCAGAGAAGTGGAAGAAATTGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAAGCAATGGCTGTGAATGATATGGAGACAACTGAATGGCTGGTGTCAGAGTTGCGCAAAATGGTGTCCATTTCAGGCAATCCAATCCAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCATAATCTACAAATCCTTAAAGTGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTACTTTATGAAATATGCCCATACTTCAAGTTTGGGTATATGTCAGCAAATGGGGCAATTGCAGAGGCTATGAAGGAAGAAAGTGAAGTCCACATAATTGATTTTCAGATTAACCAGGGAACCCAGTGGGTGAGCCTAATCCAGGCTCTTGCTCACCGACCTGGAGGACCCCCAAAGATCAGAATAACAGCTGTTGATGACTCAGTTTCAGCTTATGCCAGGGGAGGGGGACTTGATATTGTGGGGAAAAGGCTATCAACACTTGCACAGTCATGTCATGTACCCTTTGAATTCCATGCTGTCAGAGCTGCAGCTTCTGAGGTGCAACTTGAAGACTTTGAGCTTCGACCTGATGAAGCTGTGGCAGTGAATTTTGCCATTATGCTGCACCATGTGCCAGATGAAAGTGTTAACAGTCATAATCATCGTGACCGGTTGTTGAGATTGGCCAAGCACTTGTCTCCTAAGGTAGTGACTCTGGTTGAGCAAGAATTTAATACCAACAATGCTCCATTCTTGCAGCGTTTCGTTGAGACAATGAACTACTACTTGGCTATTTTTGAATCACTTGATGTGGTTATGCCAAGGGAGCACAAAGAGAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAATAGCATGTGAAGGAGCAGAAAGAGTGGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTTACAATGGCTGGTTTTACACCTTATCCATTGAGCTCCTTCATTAATTCTTCAATCAAGGATCTTCTGGAGAGCTACCGCGGACATTATACTCTAGAAGAGACAGATGGTGCACTATATCTTGGTTGGAAGAATCAAGTTCTTATTGCTTCTTGTGCTTGGAGATGA 1641 0.4211 MQTSQKHEITYGSGRFYVEPVQNLESYCFPSSENLENYCSSDNSCQTTYPSVQTLEQYGTLESASTSNSFPYQNSPSAVSFSSNNSPVSKVESNSYVLRPQNSLEIVNGSPEDDSYLTHDLDDLTHKIRELETAMLGPNADVLDIYDAVIPEESDSFLLEAEKWKKLMEMVSRGDLKEMLYTCAKAMAVNDMETTEWLVSELRKMVSISGNPIQRLGAYMLEALVARMASSGSIIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESEVHIIDFQINQGTQWVSLIQALAHRPGGPPKIRITAVDDSVSAYARGGGLDIVGKRLSTLAQSCHVPFEFHAVRAAASEVQLEDFELRPDEAVAVNFAIMLHHVPDESVNSHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAIFESLDVVMPREHKERINVEQHCLAREVVNLIACEGAERVERHELLNKWRMRFTMAGFTPYPLSSFINSSIKDLLESYRGHYTLEETDGALYLGWKNQVLIASCAWR. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02965 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Seca6g02965 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 541 IPR005202 -
Seca6g02965 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02965 Seca-Chr6 95524323 95525963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02965 1 546 GRAS Transcription Factor Family AT1G50600 57.350 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g02965 GRAS 6.5e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02965 - - gmx:100785400 957.207