Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02960 ATGGAAGGGGGTGAAAGTGAAACTATGAGCCTTGATTGGGAACAAGCAGTGAGGAAGTATGAGAATGTTATAGCCTCAGGGACCAAATCTATGAAAATGAAAGCCATGGTCATGCTGGCCCGTTACTCTAAACATGCCCCTGAGCATGTATTAGCTCGCACCATACCTATTCTCACTGAGATTCTTGACCAAGATATTTCAAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGTATTGTTAGCAGAGGTGATGGTGGGTTAGCAATTGAAATGGGTGGACATGGTGCTACACATTCTTTGATAAGGTTGTTGCCTCATTCTGAGGGAAAGATGCAGGAAATCCTGATAAAATGTTTGCTGGTTGTTGTCAGTTTTTGCAATGCAAGTAGGACAGTTGTTGCCACCAATGGTGGATTAGAAATCATCATCAATTTGTTGAATTCTTGCACCAATGATACTAGGAGGTATATGCTAGAGATTTTGAGTGTGTTGGCATTGCGGAGGGATGTTAGGAAGGCACTCACTAGATTAGGAGCTCTTCATTTTGTTGTGGAGGCTGCTGGTACTGGCAGCATGGTGTCTAGGGAAAGAGCATGTCAATCAATTGGGTTGCTTGGAGTCACAAGACAGGCTAGGCGTATGCTTGTTGAATTGGGAGCTATACCGGTGCTTGTGGAGTTGTTTCGTGATGGAGATCACAAAGCAAAACTTATAGCTGGTAATTCTCTTGGTGTGGTATGTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCCGGGGCTATTCCCCTTTATGCTGAGCTCCTTCAAGGACTTGATCCTTCTGGTAAGGAGATAGCTGAGGATGTGTTTTGTATACTGGCTGTTGCAGAGGCTAATGCTGTTGAAATTGCTGGACACTTGGTGAGAATTCTTAGAGAAGGTGATGAAGAAGCAAAAGCAGCTGCTGCTGATGTGGTGTGGGATCTGTCAGGTTACAAGCACTCAACATCTGTGGTCCGGGATTCAGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGCAGTGGAACTGAAGAGTTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTAAGCTATGATGAAGAAGATAGAATGGCACTTGCTGAGGCAGGGGCAATTCCAATTCTCATTGACTTGCTGCATGATGAAACTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTGCCAACTTCTATGAAGATCCATTATACCATGACAGAGTATCTGATGCAGTTAATGTTCCTTCATTCAGAAATATGCAAAATAGACTGATTCATATTCGTGCATCGAACGAGCACATGAATAGATCTTTACGAAGAATGAGTGTTGAGCAGCTCATTTGGAACCCGGATCTTGTATAA 1401 0.4368 MEGGESETMSLDWEQAVRKYENVIASGTKSMKMKAMVMLARYSKHAPEHVLARTIPILTEILDQDISNDSAPSLQEAAAYCLKCIVSRGDGGLAIEMGGHGATHSLIRLLPHSEGKMQEILIKCLLVVVSFCNASRTVVATNGGLEIIINLLNSCTNDTRRYMLEILSVLALRRDVRKALTRLGALHFVVEAAGTGSMVSRERACQSIGLLGVTRQARRMLVELGAIPVLVELFRDGDHKAKLIAGNSLGVVCAHVDYIRPVAQAGAIPLYAELLQGLDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGDEEAKAAAADVVWDLSGYKHSTSVVRDSGAIPILVELLGSGTEELKENVSGAFAQLSYDEEDRMALAEAGAIPILIDLLHDETEELRDNAAEALANFYEDPLYHDRVSDAVNVPSFRNMQNRLIHIRASNEHMNRSLRRMSVEQLIWNPDLV. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02960 466 ProSiteProfiles HEAT repeat profile. 385 411 IPR021133 -
Seca6g02960 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 411 IPR000225 GO:0005515
Seca6g02960 466 SUPERFAMILY ARM repeat 54 413 IPR016024 -
Seca6g02960 466 Pfam Armadillo/beta-catenin-like repeat 374 410 IPR000225 GO:0005515
Seca6g02960 466 Pfam Armadillo/beta-catenin-like repeat 336 371 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 132 172 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 42 87 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 332 372 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 255 295 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 373 413 IPR000225 GO:0005515
Seca6g02960 466 SMART arm_5 214 254 IPR000225 GO:0005515
Seca6g02960 466 Gene3D - 333 459 IPR011989 -
Seca6g02960 466 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 307 423 - -
Seca6g02960 466 Gene3D - 13 332 IPR011989 -
Seca6g02960 466 Coils Coil 390 410 - -
Seca6g02960 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02960 Seca-Chr6 95457810 95460029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02960 262 446 U-box Gene Family AT2G28830 27.451 1.30e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02960 - - gmx:100819735 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02960 6 95457810 95460029 Seca6g02960 6 95457810 95460029 ECH