Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02958 ATGAAACTGATGGATGGATATTCTCGCCCTAAGTTCAATATAGCTGCTGCTATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTTTGATCACATTTGCCTTTTGCTTGATATTCTTGATATCTGTTCCAGAGGGGGTCATAAATTCAGGTGTTGCTGGGTTAGCTGTAACCTATGGCCTTAGTTTGAACATTGTACAAACATGGATGATATGGGAACTTAGCAACTTGGAGACCAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTCCATTCCCAGTGAGCCTCCTCTTGTTATAGAGGAAAATCGGCCGCATACTTCTTGGCCAACCGGAAGTGGTAAATCCACTCTCATACAAGCACTTTTTCGAATTGTTGAACCTACTTTTGGGAGAATCATGATTGATGGCATCAACATCTCTTCCATTGGACTTCATGATTTGAGGTCTAGATTGAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGTACTGTGAGAAGTAACCTTGACCCACTAGAAGAGTACACAGATAATCAAATTTGGGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTATGTTTAGGTAGGGTGCTGCTTAAGAAGAGTAAGGTGTTGGTGTTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCTCTGATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGACAGTGACATGGTTCTATTACTTAGACTTATTGAGGAGTATGATTCCCCAACAAGATTGCTAGAGGACAAGTTATCGTCTTTTGCCCAACTTGTTGTAGAGTATACCACAAGGTCCAACTCCAGTTTGTTTCTTTGCTATGTTGCATGTTCTGTAAACAATATGGCTAAACTTGCCCCTCTTGAAGAGTCCCTTTTGAACGGTGACTCTAGTGTAAGCAACAATTGTAATACAAAAAATATCAGAGGAAATGAAATTTTAAGCAGTTATACAAATGCTGGATTTTTCAGTATTCTTACTTTCTCATGGATCAGTCCACTAATAAATCTAGGAAATAAGAAGACTTTAGACCATGAGGACCTCCCACTGCTTGCTATCAATGACAGTGCTTATGGGGCTTTTCCAACTTTTAGAAACAAGCTTGAGTCAGAGTGTGGTAGTGTTGAGAGAGTGACCACTCTTAAGCTGGTCAAGGTGTTATTCCTCTCAACATGGCAAGGGATCCTTTTATCAGGCTTATTTGCATTCTTGTACACATGTGCTTCGTATGTTGGACCCTACCTTATTGACAACCTTTTTAAGAATGAAGGCTTTATTTTGGCTATGGGATTTGTTGCTGCAAAGCTTGTGGAGTGCCTTTCACGGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGATTAGGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTCTGCAAGTTGCTTTGGCCTTGTTAATTCTTTATAGAAGTGTAGGGGTTGCTTCAACAGCTGCTTTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAAAAATTCCAAGATAAAAGAATGAAGGCCACGTCTGAGACTCTAATGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAACTTAGGAAGACAGAAGAGATATGGCTAAAGAAGTTTCTTGTTGGTACAGCAATTATTAGATTTCTCTTCTTTAACGCCCCAACTTTTATTGCTGTGGTTACTTGCATCCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCCATCTACTCTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCACTTGATAGGATTGCATCATTTCTTTGTCTGGATGACTTGCAGACTGAAATAGTGGAGAAGCTTCCACGGGATGGAAATTTCTCTTGGGATTTATCTTCTGTTAATACAACATTGAAAAACATAAATCTCAGAGTTTTTCATGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCATCTTTATTGGGTGAAGTACCAAAGCTAACTGGGACCCTGAAGGTATGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAGGGAAAAATATGAGAAGGTGCTAGAGGCATGTTCGTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTTTACCAAGATGCTGATATATATCTGCTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTTATATACATAACTCATCAAGTGGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAATGATTACTCAATCTGGAAAATACAATGACATTCTCAGGTCAGGCACTGATTTTATGGAACTTGTAGATGCACATAGAGCAGCCCTGTCTTCAGTGAAGTCCTTAGAGAGAAGGCCCACATTTAGAACATTGAGTATGACCAAGGAGGACACAGATTCATTTAGTGGTTTTGAACTTGAGGAACAAGTGGAAAACATAGATGATCAAAATGGCAAGTCAGATGACACAGTTGAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAAAAGGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAACAGCCTATGGAGGAGCTCTTACACTCACTGTGACTTTCCAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAAGCACAGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCCTTTTTCACCCTTGCCAGGGCAATTCTTGCTGTGATATCTGGATACAAGACAGCCACTATGCTTTTTGATAAAATGCATTTGTGCATTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGACGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCACTAGATATGAGCATTCCAAATCTAGTATGGGGAATTACCTTCAATCTGATTCAGCTCTTGGGAAATATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAATCTTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACTCACCATCAGCACGGGAATTGGCACGATTAGTTATACAACATTTTTCTGAAACCATATCTGGATCAACAACCATAAGAGGTTTTGAGCAAGAAACAAGATTTAATGACATAAATATGAAATTGATAGATAAATATTCCCAACCCAAATTATACAGTGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATATTTTATCCTCTACCATATTTGCCTTCTGTTTGGTTTTCTTGATAAGTTTTCCAAGTTCAATTACTGATCCAAGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATTCTCTACAATTCAATTTAATCTGGTATCTTTGCAATTTAGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGACAACCAACCAGATCATTATTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGCCTGTTGCTGGACAAATATTGGTAGATAACATTAACATCTCTCTGATTGGAATTCATGATTTACGGTCCAGATTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGATCCACTGGAAGAGTACACTGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTACGGAAAAAAGAAGGGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGACAGTTGGTCTGCCTTGGCCGTGTTCTACTAAAGAAAAGTAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATGTTATTCAGAAAACAGTCAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATTACTTCAATCCTTGATAGTGACATGGTTCTGTTTCTAAGGCTTATTGAGGAATATGACTCACCAAAGAAGCTGCTTAAGAACAAATCTTCATCTCTTGCTCAGCTAGTAGCAGAATACACAAGGAGGTCAGACTCTGGTTTTGGAAGTTGA 4461 0.3961 MKLMDGYSRPKFNIAAAMEWLCFRLDMLSLITFAFCLIFLISVPEGVINSGVAGLAVTYGLSLNIVQTWMIWELSNLETKIISVERILQYTSIPSEPPLVIEENRPHTSWPTGSGKSTLIQALFRIVEPTFGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDNQIWENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLRLIEEYDSPTRLLEDKLSSFAQLVVEYTTRSNSSLFLCYVACSVNNMAKLAPLEESLLNGDSSVSNNCNTKNIRGNEILSSYTNAGFFSILTFSWISPLINLGNKKTLDHEDLPLLAINDSAYGAFPTFRNKLESECGSVERVTTLKLVKVLFLSTWQGILLSGLFAFLYTCASYVGPYLIDNLFKNEGFILAMGFVAAKLVECLSRRHWMFRFQQVGIRMQSMLVAMIYAKGEFCWYMHDPWMAVLQVALALLILYRSVGVASTAAFAATVIVMLLNLPVASLQEKFQDKRMKATSETLMNMRILKLQAWEMKFLSKIIQLRKTEEIWLKKFLVGTAIIRFLFFNAPTFIAVVTCIPLESGKILSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLCLDDLQTEIVEKLPRDGNFSWDLSSVNTTLKNINLRVFHGMKVAVCGTVGSGKSTLLSSLLGEVPKLTGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGMITQSGKYNDILRSGTDFMELVDAHRAALSSVKSLERRPTFRTLSMTKEDTDSFSGFELEEQVENIDDQNGKSDDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALTLTVTFQIASNYWMALATPVSASTEPDIGSFTLMVVYVALAIGSSFFTLARAILAVISGYKTATMLFDKMHLCIFRAPMSFFDATPSGRILNRASTDQSALDMSIPNLVWGITFNLIQLLGNIAVMSQAAWQVFIILIPVMAACIWYQRYYSPSARELARLVIQHFSETISGSTTIRGFEQETRFNDINMKLIDKYSQPKLYSASAMEWLSFRLDILSSTIFAFCLVFLISFPSSITDPSIAGLAVTYGLNLNSLQFNLIWYLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHYWPSFGEVHIQDLQPVAGQILVDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNVIQKTVKQHFSECTVITIAHRITSILDSDMVLFLRLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSDSGFGS. 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02958 1486 ProSitePatterns ABC transporters family signature. 798 812 IPR017871 GO:0005524|GO:0016887
Seca6g02958 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 502 649 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02958 1486 CDD ABC_6TM_ABCC_D2 983 1263 IPR044726 GO:0140359
Seca6g02958 1486 Pfam ABC transporter 691 825 IPR003439 GO:0005524
Seca6g02958 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1293 1464 IPR027417 -
Seca6g02958 1486 FunFam ABC transporter C family member 5 660 905 - -
Seca6g02958 1486 Pfam ABC transporter 111 217 IPR003439 GO:0005524
Seca6g02958 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 895 IPR027417 -
Seca6g02958 1486 FunFam ABC transporter C family member 5 947 1269 - -
Seca6g02958 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 284 IPR003439 GO:0005524
Seca6g02958 1486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 342 1294 - -
Seca6g02958 1486 SUPERFAMILY ABC transporter transmembrane region 978 1270 IPR036640 GO:0005524|GO:0016020
Seca6g02958 1486 CDD ABCC_MRP_domain1 676 872 - -
Seca6g02958 1486 SUPERFAMILY ABC transporter transmembrane region 416 661 IPR036640 GO:0005524|GO:0016020
Seca6g02958 1486 CDD ABCC_MRP_domain2 112 268 - -
Seca6g02958 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1474 IPR003439 GO:0005524
Seca6g02958 1486 CDD ABC_6TM_ABCC_D1 421 657 IPR044746 GO:0140359
Seca6g02958 1486 Gene3D - 669 914 IPR027417 -
Seca6g02958 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 666 896 IPR003439 GO:0005524
Seca6g02958 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 982 1251 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02958 1486 SMART AAA_5 104 269 IPR003593 GO:0016887
Seca6g02958 1486 SMART AAA_5 700 878 IPR003593 GO:0016887
Seca6g02958 1486 CDD ABCC_MRP_domain2 1293 1458 - -
Seca6g02958 1486 Pfam ABC transporter 1291 1407 IPR003439 GO:0005524
Seca6g02958 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 260 IPR027417 -
Seca6g02958 1486 SUPERFAMILY ABC transporter transmembrane region 2 97 IPR036640 GO:0005524|GO:0016020
Seca6g02958 1486 Gene3D - 1287 1476 IPR027417 -
Seca6g02958 1486 Gene3D - 183 294 IPR027417 -
Seca6g02958 1486 Gene3D - 111 182 IPR027417 -
Seca6g02958 1486 Gene3D ABC transporter type 1, transmembrane domain 1 97 IPR036640 GO:0005524|GO:0016020
Seca6g02958 1486 Gene3D ABC transporter type 1, transmembrane domain 948 1269 IPR036640 GO:0005524|GO:0016020
Seca6g02958 1486 FunFam Multidrug resistance-associated protein member 4 1288 1476 - -
Seca6g02958 1486 Pfam ABC transporter transmembrane region 987 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02958 1486 Gene3D ABC transporter type 1, transmembrane domain 392 667 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02958 Seca-Chr6 95434868 95446366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02958 643 912 Calmodulin-binding Proteins AT2G36910 27.586 1.83e-24 109