Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02957 ATGAAGCTGGTTTTCTTGCATGGCATTGGCTTATCCAGTTTCCTCCATCTATTGTTGTTAGTGACGCTTTTAGTGTCATGGTTGTGGAGGAAAGTCAAAGTTGGAGCAAGAGACGGAGAGAATTCCAAAGAGAAACTTTGTTCTCTGGGTGTTTCTGCTTTCAATCTGCTGCTCTGTTTGTATGATTGCTTCTGTTGGTATAGAAATGGTTGGTCAGATGAAAAGCTCATGACCCTTTTGGATTCGGCGCTCAAAACTGTTGCTTGGGGTGCTGTTTGTGTTTACCTGCACAAGGAACTTTTCAGTTCAAGTGAAAGAAGATTACCATTCTTATTCAGAACTTGGTGTGTCATCTATCTCTTCATTTCATGTTATTGCTTAGTAGTGGACGTTGTTCTCTATGAAAAGGGCACTGCTTTGCCAATTCAGTACTTAGTTTCTGATGTTTTCTCTTCTTGTGTGGGTCTATTCATATGTTACTTGACTTTTTTTGTGAAAATTGAGGGTGGAGTAAGAGATAGAACTCTTCAAGAACCTCTTTTGAATGGTGATAGGAACGTGTCAGGGAAAAAAGAGACCAAGGAGGTTGAGACTGTTACCCCTTACTCTAGTGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGGTTGGTCCTCTGATTGCTGTTGGAAACAAGAAAACTTTAGACCTTGAGGATGTCCCCCAACTTGACACAAGAGACAGTTCAGTTGGAGCTTTTCCAACTTTCAGGGATAAACTTGAAGCAGATTGTGGGGATATTAACAAAGTGACCACACTTAAGCTAGAACAAAATTTTGAAAATGAGGGTCTTGTTTTGGTGTCAGCATTTTTTGTGGCAAAGCTTGTGGAGTGTCTGTCATGGAGGCACTGGTTCTTTAGGTTGCAGCAGGTTGGAATTCGAATCCAAGCACTGCTTGTGACAATCATCTATAATAAATCTTTAACCCTTTCATGTCAATCCAAGCAGGGTCACACTACTGGGGAGATAATCAATTTGATGACTGTTGATGCTGAAAGAGTTGTTCCTCAGGTTTTAATTGGCTTGTTGATTTTGTATAAAAATCTTGAGCTTGCATCAATTTCTGGGTTTGTTGCAACTGTGATTGTAATGTTAGGAAATATTCCCTTGGGGTCAATCCAAGAGAAGTTTCAAGACAAGTTGATGGAGTCAAAAGATAAAAGAATGAAGACCACATCTGAAATTTTAAGGAACATGAAGATTCTCAAACTGCAAGGATGGGAAATGAAGAGGACTGAGCAAGGCTGGTTGAAAAAATCTGCATGCACTTTAGTCATAACCACGTTTGTATATTGGAGTACCCCAACATTTGTGTCTGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATCTTATCTTCAATTGCAACATTCCAGAATCTTCAAGAACCCATTTATAATCTTCCAGACACAATTTCATTGATGATACAAACTAAGTCTGATATTGTGGAGAAGCTTCCACAGGGTAGTTCTGATACAGCAATTGAAGTGGTTGATGGAAATTTCTCTTGGGATTTATTTTCACCTAATGCAACATTGAAAAATATAAATCTCAGTGTTTTTCATGGCATGAAGGTTGCTATTTGTGGTACTGTTGGATCAGGCAAGTCTGCATTACTTTCTTGCATATTGGGAGAAGTACCAAAGATATCAGGGACCCTGAAGGTGTGTGGAACAAAGGCCTATGTGGCTCAGTCTCCATGGATACAAAGTGGCAAGATAGAAGAGAACATATTATATGAGAAGGTTTTAGAAGCATGTTCCCTAAAGAAGGATTTAGATATTTTATCATTTGGAGATCAGACAATTATAGGGGAAAGGGGAATAAATTTGAGCGGTGGACAGAAACAAAGAATACAAATTGCTCGAGCCTTATACCAAGATGCTGATATATATCTATTTGATGATCCATTTAGTGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAATGCTTGTTGGGTCTTTTAAATTCAAAGACAGTGGTTTATGTCACTCATCAAGTCATGAAGGATGGGAAAATTACTCAATGTGGAAAGTATTATGATCTGCTCAACTCAGGCACTGATTTAATGGAACTTGTTTGTGCTCATAGAGAAGCTTTGTCTGCACTTGATTCATTAGATGGAGACACAGTATCTGATAAAATAAGTACATCAAAACAGAATGTTATTGTCTCTCTTTCTCATGATGTTGAAGAAAAAGATGGTGGAACAGATGACAAATGTGATCCAAAAGGCCAGCTTGTCCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACAACAGCATATGGAGGAGCACTTGTACCACTCATATTTCTTGCTGAAATTATGTTTCTACTTCTTGAAATTGCAAGCGACTTTTGGATGGTTTGGGCAACTCCCATTTCAACAGATGAGGAGCCACCTGTTGGAGGAAGGACACTTCTAGTTGTCTATGTAGCAACACTTATTGTCATAGCTGGTTATAAGACAGCTACTCTACTCTTCAATAAATTGCATTTAAGCATTTTCCGTGCTCCAATGTCTTTTTTTGATGCCACCCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATACAGACATTCCTTCTCAGGCTGGATCATTTGTTTGCTCCATGATCCATCTCCTCGGAATTATAGTGGTGATGTCTCAGGTTGCATGGCAAGTTTGCATTGTCATTATTCCAGTGATAGCAATTAGTATCTGGTATCAGTTGTGCAGCAATATTACTTACCATCAGCCCGGGAACTATCTCGTTTAG 2871 0.3922 MKLVFLHGIGLSSFLHLLLLVTLLVSWLWRKVKVGARDGENSKEKLCSLGVSAFNLLLCLYDCFCWYRNGWSDEKLMTLLDSALKTVAWGAVCVYLHKELFSSSERRLPFLFRTWCVIYLFISCYCLVVDVVLYEKGTALPIQYLVSDVFSSCVGLFICYLTFFVKIEGGVRDRTLQEPLLNGDRNVSGKKETKEVETVTPYSSAGIFSILTFSWVGPLIAVGNKKTLDLEDVPQLDTRDSSVGAFPTFRDKLEADCGDINKVTTLKLEQNFENEGLVLVSAFFVAKLVECLSWRHWFFRLQQVGIRIQALLVTIIYNKSLTLSCQSKQGHTTGEIINLMTVDAERVVPQVLIGLLILYKNLELASISGFVATVIVMLGNIPLGSIQEKFQDKLMESKDKRMKTTSEILRNMKILKLQGWEMKRTEQGWLKKSACTLVITTFVYWSTPTFVSVVTFGTCMLIGIPLESGKILSSIATFQNLQEPIYNLPDTISLMIQTKSDIVEKLPQGSSDTAIEVVDGNFSWDLFSPNATLKNINLSVFHGMKVAICGTVGSGKSALLSCILGEVPKISGTLKVCGTKAYVAQSPWIQSGKIEENILYEKVLEACSLKKDLDILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLNSKTVVYVTHQVMKDGKITQCGKYYDLLNSGTDLMELVCAHREALSALDSLDGDTVSDKISTSKQNVIVSLSHDVEEKDGGTDDKCDPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPLIFLAEIMFLLLEIASDFWMVWATPISTDEEPPVGGRTLLVVYVATLIVIAGYKTATLLFNKLHLSIFRAPMSFFDATPSGRILNRASTDQSAVDTDIPSQAGSFVCSMIHLLGIIVVMSQVAWQVCIVIIPVIAISIWYQLCSNITYHQPGNYLV. 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02957 956 Gene3D ABC transporter type 1, transmembrane domain 193 504 IPR036640 GO:0005524|GO:0016020
Seca6g02957 956 Gene3D - 524 728 IPR027417 -
Seca6g02957 956 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 205 497 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02957 956 Pfam ABC transporter 533 658 IPR003439 GO:0005524
Seca6g02957 956 SMART AAA_5 542 708 IPR003593 GO:0016887
Seca6g02957 956 Pfam ABC transporter transmembrane region 842 940 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02957 956 Pfam ABC transporter transmembrane region 279 426 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02957 956 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 742 IPR003439 GO:0005524
Seca6g02957 956 FunFam ABC transporter C family member 10 260 503 - -
Seca6g02957 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 714 IPR027417 -
Seca6g02957 956 CDD ABCC_MRP_domain1 515 695 - -
Seca6g02957 956 SUPERFAMILY ABC transporter transmembrane region 786 943 IPR036640 GO:0005524|GO:0016020
Seca6g02957 956 Gene3D ABC transporter type 1, transmembrane domain 762 950 IPR036640 GO:0005524|GO:0016020
Seca6g02957 956 ProSitePatterns ABC transporters family signature. 631 645 IPR017871 GO:0005524|GO:0016887
Seca6g02957 956 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 202 943 - -
Seca6g02957 956 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 836 942 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02957 956 CDD ABC_6TM_ABCC_D1 274 499 IPR044746 GO:0140359
Seca6g02957 956 FunFam ABC transporter C family member 5 500 727 - -
Seca6g02957 956 SUPERFAMILY ABC transporter transmembrane region 270 495 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02957 Seca-Chr6 95431019 95434763 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02957 515 724 Calmodulin-binding Proteins AT2G36910 28.400 1.25e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02957 - K05666 gmx:100775358 1323.53