Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02955 ATGAAGCTGGTTTTCTTGCATGGCATTGGCTTATCAAGTTTCCTCCATCTATTGTTGTTAGTGGCGCTTTTAGTGTCATGGTTGTGGAGGAAAGTCAAACTTGAAGCAAGAGACGGAGACAATTCCAAAGAGAAAGTAAAAAACACCTTGTTTACAAGGACTCTGCTTTGTTCTCTGGGTGTTTCTGTTTTCAATCTTCTGCTCTGTTTGTTTGATTACTTCTGTTGGTATAGAAATGGTTTTTCAGAAGAAAAGCTCATGACCCTTTTGGATTTGGGGCTTAAAACACTTGCTTGGGGTGCTGTTTGTGTTTGCCTGCCCAGGGAACTCTTCAGTTCAAGTCAAAGAAGATTAGCATTCTTTTTTAGAATTTGGTGTGCCTTCTACCTCTTTGTTTCCAGTTATTGCTTTATAGTAGACATTGTTCTCTATGAAAAGCATGCTTCTTTGCCAATTCAGTACTTAGTTTCTGATGTTTTCTCTTCTTGTGTTGGTTTATTCATCTGTTACCTGACTTTTTTTGTGAAAATTGAGGGTAGAGTAGGAGATAGCACTCATCAAGAACCTTTTTTGAATGGTGATACAATAGATAGTAATGTGCCAGCAACAAAAGAGATCAAGGGGGTTGACACTGTTACCCCTTACTCTAATGCTGGATTTTTCAGCAATCTTACCTTCTCTTGGGTTGGTCCTCTGATTGCTGTTGGAAAGAACAAAACTTTAGACCTTGAGGATGTCCCCCAACTTGACAGAAGAGACAGTTTAGTTGGATCTTTTCCAACTTTCAGGGACAAGCTTGAAGCAGATTGTGGGGATATTAACAGAGTGACCACACTTAAGCTAGTGAAGTCATTAATATTCTCAGCCTGGAAAGAGACTCTCTTGACAGCTATCCTTGCATTGGTAAACACATTGGCTTCATATGTGGGTCCCTATCTTATTAATGCTTTTGTTCAGTACCTTAATGGAAAGCAGAATTTTGAAAATGAGGGTCTTGTTTTAGTGTCAGCATTTTTTGTGGCAAAGCTTGTGGAGTGCATGTCAAGGAGGCACTGGCTCTTTAGGTTGCAACAGGTTGGAATTCGAATCCAAGCACTTCTTGTGACAATCATCTATAATAAAGCTTTGACCCTTTCATGTCAATCCAAGCAAGGCCACACTACTGGAGAGATAATCAATTTCATGACTGTTGATGCTGAAAGAGTAGGTGACTTCAGTTGGCACTTGCATGATCTGTGGTTGGTAGCTCTGCAGGTTTTAGTAGCCTTGTTGGTTTTGTACATAAATCTTGGACTTGCTTCAATTTCTGGGTTTGTTGCAACTGTCATTGTAATGTTGGCAAATATTCCATTGGGGTCAACCCAAGAGAAGTTTCAAGACAAATTGATGGAGTCAAGAGATAAAAGAATGAAGGCCACGTCTGAGATTTTAAGGAACATGAGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAGATAACTGAACTCAGGAAGACTGAGCAAGGCTGGTTGAAAAAATTTGTATACACTTTAGCCATGATCATATTTGTCTATTGGAGTGCCCCAGCATTTGTGTCTGTGGTTACTTTTGGTTCTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCAGATTCTTCAAGAGTCCATTTATAATCTTCCAGACACACTTTCAATGATGGCACAAACTAAGGTTTCTCTTGATCGAATAGCCTCTTTCCTTTGTCTAGATGACATGCAATCTGATATTGTGGAGAAGCTTCCACAGGGTAGTTCTGATACAGCAATTGAAGTGGTTGATGGAAATTTCTCTTGGGATTTATTTTCACCTAATGCAACATTGAAAAATATAAATCTCAGAGTTTTTCATGGCATGAAGGTTGCTATTTGTGGTACTGTTGGATCAGGCAAGTCTGCATTACTTTCTTGCATATTGGGAGAAGTACCAAAGATATCAGGGACCCTGAAGGTGTGTGGAACAAAGGCCTATGTGGCTCAGTCTCCATGGATACAAAGTGGCAAGATAGAAGAGAACATATTATTTGGAAAAGAAATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCTTGTTCCCTAAAGAAGGATCTAGATATTTTGCCATTTGGAGATCAGACAATTATAGGGGAAAGGGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGAGCTCTATACCAAGATGCTGATATATATCTATTTGATGATCCGTTTAGCGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAATGCTTGTTGGGTCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCATCTGACCTTATCTTGGTCATGAAGGATGGGAAAATTACTCAATGTGGAAAGTATAATGATCTACTCAATTCAGGCACTGAGTTTATGGAACTTATTGGTGCTCACAGAGAAGCTTTGTCTGCACTTGATTCACTAGATGGAGACACGGTATCTGATAAAATAAGTACATCACAAAAGGATGTAAATGTCTCTCTTTCTCATGGTGTTAAAGAGAAAGAAGTAAATAAAGATGTGCAAAACAGTGGAACGGATGACAAATGTGAGCCAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTTAGTCTATTGGAAATATCTCACAACATCATATGGAGGAGCACTTGTACCACTCATATTGCTGGCTGAAATTTTGTTTCAACTTCTTCAAATTGCAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAAAAGATGTGGAGCCAACTATTGGAGGAAGTACACTTCTAGTAGTCTATGTAGCTTTGGCCATAGGAAGTTCTTTATGTGTTCTTACCAGAGCAACACTTGTTGTCACAGCTGGTTATAAGACTGCTACTTTACTCTTCAATAAAATGCATCTCTGCATTTTCCGCGCTTCAATGTCATTTTTTGATGCCACTCCAAGTGGGAGGATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATATAAATATCCCTTTCCAAACTGCATCATTTGCATGCTCCATGATCCATCTCCTTGGAATAGTAGTGGTGATGTCTCAGGTTGTATGGCAAGTTTTCATTGTATTTATTCCTATGACAGCAATCAGTATCTGGTATCAGCAATATTATTTACCATCAGCACGGGAACTATCACGGTTAGTTGGAGTATGCAAAGCTCCTGTCATTCAACATTTTGCTGAAACAATTTCAGGTACATCAACCATCAGGAGCTTTGATCAAGTGTCAAGGTTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCCCAAGTTCAATATAGCTGGTGCTATGGAATGGTTGTGCTTCCGCTTAGATATGATGTCTTCTATCACATTTGCTTTTTGCTTGATATTCTTGATATCTATTCCACAAGGAGTCATAGAATCAGGCATTGCTGGTTTAGCTGTAACATATGGTCTTAATCTGAACATTATACAAGCATGGATGATATGGGAACTTAGCAACTTGGAGACCAAACTTATATCAGTAGAAAGAATACTTCAGTATACTTCCATTCCTAGTGAACCTCCTCTTGTTATAGAGGAAAATCGCCCGCATACTTCTTGGCCATCATATGGCACGGTTGATATTCACAACTTGCAGGTGCGTTATGCTCCACATATGCCACTTGTGTTGCGGGGCCTTACTTGCACATTTCTTGGAGGAAAGAAAACTGGAATTGTTGGGAGAACGGGTAGTGGTAAATCAACTCTCATACAAGCACTTTTCCGAATTGTTGAACCTACTTTTGGGAGAATCATGATTGATGGCATCAACATCTCTTCCATTGGACTTCATGATTTGAGGTCTAGACTGAGCATTATTCCTCAAGATCCAACAATGTTTGAAGGTTCTGTGAGAAGTAACCTTGACCCACTAGAAGAGTACACAGATAATCAAATTTGGGAGGCCCTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAGGAAAGAAGGAAAGTTAGATTCTGCAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTATGTTTAGGTAGGGTGCTGCTTAAGAAGAGTAAGGTTTTGGTGTTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCTCTGATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGACAGTGACATGGTTCTGTTACTTAATCAAGGACTAATTGAGGAGTATGATTCCCCAACAAGATTGCTAGAGGACAAGTTATCGTCATTTGCTCAACTTGTTGCAGAGTATACCACAAGGTCCAACTCCAGTTTTGACCAACTAAAATAA 4461 0.395 MKLVFLHGIGLSSFLHLLLLVALLVSWLWRKVKLEARDGDNSKEKVKNTLFTRTLLCSLGVSVFNLLLCLFDYFCWYRNGFSEEKLMTLLDLGLKTLAWGAVCVCLPRELFSSSQRRLAFFFRIWCAFYLFVSSYCFIVDIVLYEKHASLPIQYLVSDVFSSCVGLFICYLTFFVKIEGRVGDSTHQEPFLNGDTIDSNVPATKEIKGVDTVTPYSNAGFFSNLTFSWVGPLIAVGKNKTLDLEDVPQLDRRDSLVGSFPTFRDKLEADCGDINRVTTLKLVKSLIFSAWKETLLTAILALVNTLASYVGPYLINAFVQYLNGKQNFENEGLVLVSAFFVAKLVECMSRRHWLFRLQQVGIRIQALLVTIIYNKALTLSCQSKQGHTTGEIINFMTVDAERVGDFSWHLHDLWLVALQVLVALLVLYINLGLASISGFVATVIVMLANIPLGSTQEKFQDKLMESRDKRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEQGWLKKFVYTLAMIIFVYWSAPAFVSVVTFGSCMLIGIPLESGKILSALATFQILQESIYNLPDTLSMMAQTKVSLDRIASFLCLDDMQSDIVEKLPQGSSDTAIEVVDGNFSWDLFSPNATLKNINLRVFHGMKVAICGTVGSGKSALLSCILGEVPKISGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLKKDLDILPFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPASDLILVMKDGKITQCGKYNDLLNSGTEFMELIGAHREALSALDSLDGDTVSDKISTSQKDVNVSLSHGVKEKEVNKDVQNSGTDDKCEPKGQLIQEEEREKGKVGFLVYWKYLTTSYGGALVPLILLAEILFQLLQIASNYWMAWATPISKDVEPTIGGSTLLVVYVALAIGSSLCVLTRATLVVTAGYKTATLLFNKMHLCIFRASMSFFDATPSGRILNRASTDQSAVDINIPFQTASFACSMIHLLGIVVVMSQVVWQVFIVFIPMTAISIWYQQYYLPSARELSRLVGVCKAPVIQHFAETISGTSTIRSFDQVSRFQQTNMKLMDGYSRPKFNIAGAMEWLCFRLDMMSSITFAFCLIFLISIPQGVIESGIAGLAVTYGLNLNIIQAWMIWELSNLETKLISVERILQYTSIPSEPPLVIEENRPHTSWPSYGTVDIHNLQVRYAPHMPLVLRGLTCTFLGGKKTGIVGRTGSGKSTLIQALFRIVEPTFGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGSVRSNLDPLEEYTDNQIWEALDKCQLGDEVRRKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLEDKLSSFAQLVAEYTTRSNSSFDQLK. 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02955 1486 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Seca6g02955 1486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 215 1473 - -
Seca6g02955 1486 Gene3D ABC transporter type 1, transmembrane domain 882 1219 IPR036640 GO:0005524|GO:0016020
Seca6g02955 1486 Gene3D ABC transporter type 1, transmembrane domain 274 588 IPR036640 GO:0005524|GO:0016020
Seca6g02955 1486 SUPERFAMILY ABC transporter transmembrane region 283 586 IPR036640 GO:0005524|GO:0016020
Seca6g02955 1486 Pfam ABC transporter 1256 1403 IPR003439 GO:0005524
Seca6g02955 1486 FunFam ABC transporter C family member 3 1221 1473 - -
Seca6g02955 1486 CDD ABCC_MRP_domain1 608 808 - -
Seca6g02955 1486 SUPERFAMILY ABC transporter transmembrane region 919 1219 IPR036640 GO:0005524|GO:0016020
Seca6g02955 1486 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524|GO:0016887
Seca6g02955 1486 FunFam ABC transporter C family member 5 593 840 - -
Seca6g02955 1486 Pfam ABC transporter transmembrane region 921 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02955 1486 Pfam ABC transporter transmembrane region 295 560 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02955 1486 CDD ABCC_MRP_domain2 1236 1456 - -
Seca6g02955 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 831 IPR003439 GO:0005524
Seca6g02955 1486 FunFam ABC transporter C family member 10 277 590 - -
Seca6g02955 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02955 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1472 IPR003439 GO:0005524
Seca6g02955 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 830 IPR027417 -
Seca6g02955 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1462 IPR027417 -
Seca6g02955 1486 FunFam ABC transporter C family member 5 882 1219 - -
Seca6g02955 1486 Gene3D - 1221 1474 IPR027417 -
Seca6g02955 1486 CDD ABC_6TM_ABCC_D2 919 1213 IPR044726 GO:0140359
Seca6g02955 1486 CDD ABC_6TM_ABCC_D1 295 582 IPR044746 GO:0140359
Seca6g02955 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g02955 1486 SMART AAA_5 1264 1449 IPR003593 GO:0016887
Seca6g02955 1486 SMART AAA_5 635 808 IPR003593 GO:0016887
Seca6g02955 1486 Gene3D - 589 846 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02955 Seca-Chr6 95366497 95372307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02955 608 865 Calmodulin-binding Proteins AT2G36910 29.137 1.81e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02955 - K05666 gmx:100775358 2368.96