Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02949 ATGGTGGAGAAGATAGAAGCAATGAGGAAGTTTAAAGGCAAAAGTAATATTCAACCATTTTCTCACCCTGCTCCACTTCCAGGCATTCAGTATGGGTCATCTGAAAACATTATTTACTTTGAATCAACAAAAGTAGCTTATAATGAACTCTTGGAGGCACTTAAGGATGATAGCATCTACATGATAGGAGTATATGGAATGGGTGGATCTGGGAAAACAACTCTTGTAACAGAAGCTGGTAAAAAGGCTGAACAATTGAATTTGTTTGATAAGGTTATATTAATCACAGTGTCTCAAACCCCAAGCATCAGAGAAGTTCAAGGAAAAATAGCAGATATGTTAAACTTGAAACTGGAGGAAGAAACTAAAGAGGGAAGAGCACAGCGAATATGGCAGAGTTTGAAAGAAAAGAAGCGAATTCTTGTCATAGTCGATGATTTATGGAGGAAATTTAATTTAGAGGATATTGGGATTTGCTTACAGAATGATAACAAGGGTGCGTGGAAAATTCTTATAACCACTCGAAATCAAAGTGTATGTACTTCAATGGACTGTCAAAAGAAGATTCATTTGGGGCTCTTATCTGAAGACGAGTCTTGGTCCTTGTTCCAAAAGCATGCAAACATTGATGATGAATTCTCTAAGTCACTAGATGATGTGCCAAGAAAACTTTGCAATGAATGTAAAGGACTACCCATAGCAATAGTAACTGTGGGATCTTCCTTAAAAGGAAAATCTAAAGATGAGTGGGAGGTAGCACTAAACAGCTTGAGGGATTCAGAGGCATTTAATGATCACGAAGAAGGAGTGAGAGCAGCTTTATGTTGTCTCAAATTAAGCTATGATTATTTAGAAAACAATGAAGTACAGCTTCTCTTTTTGATGTGTTCTATGTTTCCAGAAGACTATAACATCTTAATAGAAGATTTGATCCAATTGGCAATTGGACTAGGTGTGGGAGGAAGATCTTCATTAAAGTCAATGAGGAGCTGGATCAAAGCAGGCATAAACAAACTTCTAGATTCTTGTTTGTTGATGAGTAATGACTACTTAATAATACATGGTCAGGAAAGCAAAGAATACATGAAGATGCATGATATGGTTCGTGAGGCAGCCTTATGGATAGCAAAGAAATTTGAGAATTGCAAAATTTTGGTAAATGTTGACAAACCACTTAGCACATTGGCAGAGGATGATAGTATAAGAGATTGTTTTGCAGTATCGTCATGGTACAAAGAAAATCAAATCTTTTGTAAATTGCATGCTCCAAAGCTTGAAATTCTATTGCTAAATACCGTGATTGGGAGAAAAATTGGGACTTTATCACATGAATCATTTGAAGAAACACAAAGGCTTAAGGTGTTTTCTGTAACGAAGAATACAAAATACTATGTTGATCGACCATTATTACAATTCCCTCAAACAATCCATTTGTGGACAAATCTTCGAATTTTGCGCTTGAATGGATGGGAGTTAGGTGACATTGCTTTCATAGCAAGCTTAACAACACTACAGGTTCTTGACTTGCGACAGTGTGAATTTAATGAACTTCCTAATGAAATAGGAAAACTCCAAAGATTGAGACTGTTAGATTTGTCAGAATGTGATATTCTTCGAGAAAATTATAATGGAGCAATAGGAAAATGTTCACAACTAGAAGAATTATACGCTTCTGAATGTGGGCCAGAAAAGTACCTTTGTCAAATTGCTATGGATATTGGTATTCTCCCAAAGCTACAGAGGTTTGTAATACATACTGGCCACATTGATATACCATATTATGCAGAATGCATGAGAGTTTTAGCAGTAACAGGTTTTAATATCTCCGAATTGAGGGCATATAAAAGGAATATTCTACAAACAGCTGAAATTATTGGTTTGAAACGCCTTGCTGGAGGATGTAAAAGTATTATCCCAGACATGGGAGATATGAATGATTTGACTAGTCTCTGTCTTGAATTTTGCAAAAAGATTGAATGCATCTTCGATACAACATCTGATTCAGAGATAGATGATTTGATTCCCAGGTTGGTCGAGTTAAGGTTGTCGGGATTGTACATATTGAAAGAATTGTGTCGAGGTCCACCCATGCAAGTGCTACCCTTTTTTGAGAAATTGAAAAGACTTGAAATATGGAACTGCCCGAAGTTGCACAGCATATTCCCGTCAGAATGTACCTTACAAAATCTTAAGATCCTTGTAATAGACCGTTGCATGTCAGTTCAAGCACTCTTCTCAACACATGTTGCTCAAAGTCTGCAGCAACTAGAAGAGCTCACTATAGCATATTGTAAGGAATTGAAACATATAATTGCAAGTGGAAGAGACCAGGGAATAGTTCCAGCTCCAAGGAATTCTCATTTTCTCATGCCTAGTTTGAAGACACTTTGCATTGATTCTTGTTGGAAGTTAGAGTTGGTATTCCCAATCTGTTGTGTTGAAGGACTTGCACAACTGCAACAGATACAGATAAGCGGGGCTCCTAGGCTGAAATATGTATTTGGTGAATGTGATCACGATGATCATTCAGCTCACCAATACCAGAACCACATCATGCTTCCTCATTTGGAAGTTCTCTCACTTGAATCTCTTGAAAATCTTGTTGGAATATGTCCTGAAAACTATCATGCAAAGTGGTCATCTCCAAGGAAGCTAACTATGAAGAATTGTCCAAAATTGGCTACATCATGGATCGCTGTGATGGATGGCTCTTATCAGAGACAACATCATCTGAATGAGAAGTTACCCTCAAAACTGCAAGAACTGTATTTAGACAGTTTACCTCAAATGAACCTCATATCATGGGTAGGTTCTACTCCAAGACAGATTTTAAGTCTCCAATGTCTTCAGCATTTACATGTGAATAAATCTGAAAACTTGAAATCTCTGTTCTCCATGGAAGTACAAAGAACCCTACCAGAGTTGATGTCCCTTACTATATGTGATTGCCAAGAATTGGAACAAATCATTGCAGCAAATAAAGAACTTGTACAACTGCCCAATGCTGAAGTTTATTTTCCAAAGCTAACAGACATAAGGGTCAAAAACTGCAACAAGTTGAAAAGCCTTTTCTCTGTTGCTATGGTTAGAATGCTTCCACAATTGAGCACTCTTCACATATCAAATGCTACTCAACTGGAAGAGATTTTTAGACATGGCAGTGGAGACAGCACTACAAATGAAATGGAAATTATGCTTCCAAACTTGACAAAGATAAAACTATATAAGCTGTCGAGTTTTGTTGATATCTGCCAGGGTTGTAAGTTACGGGCTGTGAAACTTCAAGAACTCGATATAGATGAATGCCCTAAAACTGCTCCAAGTTTGATAGAAATTCAGTTGCTACTAGAAGAAGCAGAGGCCATTAGGAGAAGATGA 3378 0.3727 MVEKIEAMRKFKGKSNIQPFSHPAPLPGIQYGSSENIIYFESTKVAYNELLEALKDDSIYMIGVYGMGGSGKTTLVTEAGKKAEQLNLFDKVILITVSQTPSIREVQGKIADMLNLKLEEETKEGRAQRIWQSLKEKKRILVIVDDLWRKFNLEDIGICLQNDNKGAWKILITTRNQSVCTSMDCQKKIHLGLLSEDESWSLFQKHANIDDEFSKSLDDVPRKLCNECKGLPIAIVTVGSSLKGKSKDEWEVALNSLRDSEAFNDHEEGVRAALCCLKLSYDYLENNEVQLLFLMCSMFPEDYNILIEDLIQLAIGLGVGGRSSLKSMRSWIKAGINKLLDSCLLMSNDYLIIHGQESKEYMKMHDMVREAALWIAKKFENCKILVNVDKPLSTLAEDDSIRDCFAVSSWYKENQIFCKLHAPKLEILLLNTVIGRKIGTLSHESFEETQRLKVFSVTKNTKYYVDRPLLQFPQTIHLWTNLRILRLNGWELGDIAFIASLTTLQVLDLRQCEFNELPNEIGKLQRLRLLDLSECDILRENYNGAIGKCSQLEELYASECGPEKYLCQIAMDIGILPKLQRFVIHTGHIDIPYYAECMRVLAVTGFNISELRAYKRNILQTAEIIGLKRLAGGCKSIIPDMGDMNDLTSLCLEFCKKIECIFDTTSDSEIDDLIPRLVELRLSGLYILKELCRGPPMQVLPFFEKLKRLEIWNCPKLHSIFPSECTLQNLKILVIDRCMSVQALFSTHVAQSLQQLEELTIAYCKELKHIIASGRDQGIVPAPRNSHFLMPSLKTLCIDSCWKLELVFPICCVEGLAQLQQIQISGAPRLKYVFGECDHDDHSAHQYQNHIMLPHLEVLSLESLENLVGICPENYHAKWSSPRKLTMKNCPKLATSWIAVMDGSYQRQHHLNEKLPSKLQELYLDSLPQMNLISWVGSTPRQILSLQCLQHLHVNKSENLKSLFSMEVQRTLPELMSLTICDCQELEQIIAANKELVQLPNAEVYFPKLTDIRVKNCNKLKSLFSVAMVRMLPQLSTLHISNATQLEEIFRHGSGDSTTNEMEIMLPNLTKIKLYKLSSFVDICQGCKLRAVKLQELDIDECPKTAPSLIEIQLLLEEAEAIRRR. 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02949 1125 Gene3D Ribonuclease Inhibitor 899 1121 IPR032675 -
Seca6g02949 1125 SUPERFAMILY L domain-like 363 890 - -
Seca6g02949 1125 FunFam Probable disease resistance protein At1g61300 34 188 - -
Seca6g02949 1125 Coils Coil 1112 1125 - -
Seca6g02949 1125 Gene3D Ribonuclease Inhibitor 411 615 IPR032675 -
Seca6g02949 1125 Pfam NB-ARC domain 49 282 IPR002182 GO:0043531
Seca6g02949 1125 Gene3D - 193 280 IPR042197 -
Seca6g02949 1125 PRINTS Disease resistance protein signature 522 538 - -
Seca6g02949 1125 PRINTS Disease resistance protein signature 134 148 - -
Seca6g02949 1125 PRINTS Disease resistance protein signature 61 76 - -
Seca6g02949 1125 PRINTS Disease resistance protein signature 228 242 - -
Seca6g02949 1125 Gene3D - 281 373 IPR036388 -
Seca6g02949 1125 Gene3D - 32 190 IPR027417 -
Seca6g02949 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 296 IPR027417 -
Seca6g02949 1125 Gene3D Ribonuclease Inhibitor 779 898 IPR032675 -
Seca6g02949 1125 Gene3D Ribonuclease Inhibitor 619 773 IPR032675 -
Seca6g02949 1125 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 853 1104 - -
Seca6g02949 1125 SUPERFAMILY RNI-like 854 1105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02949 Seca-Chr6 95297368 95302508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02949 59 535 WRKY Transcription Factor Family AT5G45050 22.702 8.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02949 - - mtr:25488990 1216.83