Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02948 | ATGGGTCTTCAAGTAACTTATCCTTTGGCCCTTTTCTCTATTTTCCTCTTCATCATTGTGACACTAATACTAAGGAGGAATCCCAAGAAAACTAACTCAATTCCAAATATACCCCCAGGGCCATGGAAACTACCTATAGTAGGCAATATACCCCATCTTGTTGGTTCTCCACCACATAGAAAATTAAGAGAATTAGCAAAAGAATATGGACCCTTGATGCATCTTCAACTTGGTGAGGTCTTCTTCATTATTGTTTCCTCAGCAGAGTATGCTAGGGAGATAATGAAAAACCATGATGTTATCTTTGCATCAAGGCCTCGTTCTCTAACATCAGAGATAATGTTTTATAATTCCACAGACATTGCATTTTCACCTTATGGTGATTACTTGAGACAGCTTAGAAAGATTTGCTCTATAGAGCTTTTAAGTACAAAACGTGTTCAATCTCATTGGCCAATCAGAGAGGAAGAGATGGCTAATCTCATCAAACGCATTGCTTCAGAAGAAGGATCAGTCATCAATCTTTCTCAAGCAGTTATATCACTGATGTACTCAATCACTTCAAGGGCTGCCTTTGGCAAGAAATACATGGAGCAAGAAGAGTTCATTTCAGTGGTTAGAGAAGTTTTAAAGCTTGCTGGAGGGTTCTACATTGGGGACTTGTTTCCTTCAGCTAAATGGCTTCAAAACCTCTCAGGGATGAGGCCTAAGCTTGAGAAGTTACACCAACAAGTAGACAGAATATTGGATAATATCATCAATGACCATAAAGAGGTTAAGTTAAGAACCAAAGAAGGTCTAGTTGAAGAAGGAGAAGAAGATCTGATTGATGTTCTCTTAAAATTTGAGGATAGTAGCAGTGACCTGGATTTTCTATTAACTAAAAGAAATATCAAGGCTATAATCTTTGATATCTTCACTGGTGGAAGTGACACTGCAGCAACTACCATTAACTGGGCAATGGCTGAGATGATGAAGGATCAAAGAGTATTGAAGAAAGCACAAGCTGAAGTGAGAAAGGTATTCGAAAGGAGAGGAAGAGCTGATGAAGCTTGCATTGATGAGCTCAAATACTTGAAAGCAGTCATCAAAGAGGTCCTTAGACTACATCCTCCTGGTCCTCTTTTAATTCCAAGAGAGTGTGGACAAGCTTGTGAGATTAATGGTTATAACATACCTGTCCAAAGTAGGATCATAGTCAATGCTTGGGCAATTGGAAGAGATCCAAAATATTGGATTGAGCCAGAGAGCTTTTATCCTGAGAGGTTTATTGATAGCTCTATTGACTACAGAGGAACTAGTTTTGAGTACATCCCATTTGGTGCTGGAAGGAGAATTTGTCCAGGCATGAACTATGGTATTGCAAGTGTTGAGTTGGTACTTGCTTCATTGTTGTATCACTTTGATTGGAGACTTCCCAAAGGAATGAAAAGTGAGGATTTGGACATGACTGAGCTATTTGGAGCATCAGTTATAAGAAAAGATGACCTGTACTTGATTCCAATGCCATTTTCACCTTTTTTTCTGTCCATGATTGTTGCACTTAACATAAGGAACAATTTCAGAAAAACAGACTCAACTAGAAATGTACCCCCAGGGCCATGGAAGCTACCTGTTATAGGAAATATTCCCCATCTTGTTGGTTCCCAACCACATAGAAAATTAAGAGAATTAGCAAAAAAATATGGACCCTTGATGCATTTGCAACTTGGTGAGGTCTTCTTCATTGTTGTTTCCTCAGCGGAGTATGCTAAGGAGGTTATGAAAACTCATGATGTTATCTTTGCATCTAGGCCTCATCTTCTAGCCACAGACATTGCATCTTATGATTCCACAGATATAGCTTTTTCACCTTATGGTGATTACTGGAGACAGCTTCGGAAGATTTGTACTACAGAGCTTTTAAGCACAAAAAGGGTCAAATCTCTTTGGCCAATCAGAGAGGAAGAGATCAATACTCTTATCAAATGGATTGCTTCAAAAGAAGGATCAGAAGTCAATCTTACTCAAGTAGTTATTTCAATGATGTATACATTCACTTCAAAGGCTGCATTTGGTAAGACATATGCAGAACAAGAAGAGTTCATATCAGTGGTGAAACAACTTATAAAGCTAGCTGGAGGTTTCTACATTGGTGACTTGTTTCCTTCAGCTAAATGGCTTCAAAACCTCTCTGGGATGAGGCCTAAACTTGAGAAGTTACACCAAAAAGTAGACAGGATACTGGAGAAAATCATCAATGACCATAAAGAGGCAAGGTCAAGAGCTAAAGAAGATTTGGTTGAAGCAGAGGAAGATCTGATTGATGTTCTCTTAAAATTTGAAGATAGTAGCAGTGATCGGGATTTTCACTTAACTACTAATAATATCAAGGCTATTATCTTTGATGTCTTCAGTGCTGGAAGTGAGACTGCAGCAACTACCATTAACTGGGCAATGGCTGAGATGATAAAGGATCCAAGAGTGTTGAAAAAAGCACAAACTGAAGTGAGAGAGGTATTTGATAGGAGAGGAAGGATTGATGAAAGTGGCATTGAGGAACTTAAATATTTGAAATCAGTCATCAAAGAATCCCTGAGATTGCACCCTTCTGTTCCTCTTCTACTTCCAAGGGAATGTGGACAAGCATGTGAGATTAATGGCTATCACATACCTGTCAAAAGTAGGGTCATAGTGAATGCTTGGACAATTGGAAGGGATCCAAAATATTGGACTGAAGCAGAGAGGTTTTATCCTGAAAGGTTTATTGATAGTTCTATTGACTACAAAGGAACTAATTTTGAGTATATCCCATTTGGTGCTGGAAGGAGAATTTGTCCAGGCATGAACTATGGTATGGCAAATGTTGAGCATGTTCTTGCATTGTTATTGTATCATTTTGATTGGAGGCTTCCCAATGGAATGAAAAATGAGGACTTTGACTTGACAGAGGAATTTGGAGTTACTGTGACAAGAAAAGGTGACCTATACTTGATTCCTATAGCTTCTCATAATTCTTTGCTTGCAACATAA | 3012 | 0.3861 | MGLQVTYPLALFSIFLFIIVTLILRRNPKKTNSIPNIPPGPWKLPIVGNIPHLVGSPPHRKLRELAKEYGPLMHLQLGEVFFIIVSSAEYAREIMKNHDVIFASRPRSLTSEIMFYNSTDIAFSPYGDYLRQLRKICSIELLSTKRVQSHWPIREEEMANLIKRIASEEGSVINLSQAVISLMYSITSRAAFGKKYMEQEEFISVVREVLKLAGGFYIGDLFPSAKWLQNLSGMRPKLEKLHQQVDRILDNIINDHKEVKLRTKEGLVEEGEEDLIDVLLKFEDSSSDLDFLLTKRNIKAIIFDIFTGGSDTAATTINWAMAEMMKDQRVLKKAQAEVRKVFERRGRADEACIDELKYLKAVIKEVLRLHPPGPLLIPRECGQACEINGYNIPVQSRIIVNAWAIGRDPKYWIEPESFYPERFIDSSIDYRGTSFEYIPFGAGRRICPGMNYGIASVELVLASLLYHFDWRLPKGMKSEDLDMTELFGASVIRKDDLYLIPMPFSPFFLSMIVALNIRNNFRKTDSTRNVPPGPWKLPVIGNIPHLVGSQPHRKLRELAKKYGPLMHLQLGEVFFIVVSSAEYAKEVMKTHDVIFASRPHLLATDIASYDSTDIAFSPYGDYWRQLRKICTTELLSTKRVKSLWPIREEEINTLIKWIASKEGSEVNLTQVVISMMYTFTSKAAFGKTYAEQEEFISVVKQLIKLAGGFYIGDLFPSAKWLQNLSGMRPKLEKLHQKVDRILEKIINDHKEARSRAKEDLVEAEEDLIDVLLKFEDSSSDRDFHLTTNNIKAIIFDVFSAGSETAATTINWAMAEMIKDPRVLKKAQTEVREVFDRRGRIDESGIEELKYLKSVIKESLRLHPSVPLLLPRECGQACEINGYHIPVKSRVIVNAWTIGRDPKYWTEAERFYPERFIDSSIDYKGTNFEYIPFGAGRRICPGMNYGMANVEHVLALLLYHFDWRLPNGMKNEDFDLTEEFGVTVTRKGDLYLIPIASHNSLLAT. | 1004 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02948 | 1003 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 932 | 941 | IPR017972 | GO:0005506|GO:0016705 | |
| Seca6g02948 | 1003 | PANTHER | OS08G0105600 PROTEIN | 554 | 996 | - | - | |
| Seca6g02948 | 1003 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506|GO:0016705 | |
| Seca6g02948 | 1003 | Gene3D | Cytochrome P450 | 523 | 989 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | Gene3D | Cytochrome P450 | 31 | 497 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | P450 superfamily signature | 308 | 325 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | SUPERFAMILY | Cytochrome P450 | 531 | 993 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | CDD | CYP71-like | 68 | 497 | - | - | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 401 | 425 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 317 | 343 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 90 | 111 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 297 | 314 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 182 | 200 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 360 | 378 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | Pfam | Cytochrome P450 | 531 | 986 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | Pfam | Cytochrome P450 | 38 | 488 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | FunFam | Cytochrome P450 71D8 | 30 | 501 | - | - | |
| Seca6g02948 | 1003 | SUPERFAMILY | Cytochrome P450 | 38 | 502 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Seca6g02948 | 1003 | CDD | CYP71-like | 561 | 989 | - | - | |
| Seca6g02948 | 1003 | FunFam | Cytochrome P450 71D8 | 523 | 993 | - | - | |
| Seca6g02948 | 1003 | Coils | Coil | 746 | 766 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02948 | Seca-Chr6 | 95288715 | 95295623 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02948 | 496 | 993 | Cytochrome P450 | AT3G26300 | 41.304 | 1.56e-131 | 405 |