Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02940 ATGGTTTTTTTATCTCACATTTACATTCTTTCTGATATCCAGATTCGATCCTTTGTTTTTGTTATGGGCAAGGGAGAGAAACATTATATTGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAGAAGGTTAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGCACGAAATCCTCACCCTCGGGAAATTTTTATCACACCATATTCTCAAGTCATTAGTGCAGAGTGTGTAGATGGTCCTGCCACGGTCTTAACTCGTGAACACTATGAAAAATGCATGCCTTCATTTTCCCCCACTTCAACAGACAGAATACATTTGTGCTTTAGGCAATTTAGAGGCAACAAAGTAAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACTATGCTCAACCAGTTCTTTCTTGCTTGCACCTTGATACTATCCAGAACACTGATTCTAAGAGCAACAGCCTCACAGGAGAAGATGAAGATTTGAATATAAGTGATGATACAAAGCTGGGAGCCAAGAGGAGCAGAAGTGATAAGGGGTCTCCTCAATCTCAGATAGGTCGACAGGGAGTTAGGAAGTTAGTTAGAAGTAAGCAAATGATGGTATATGAAACCTTCCAGGTTGTAAATTATGCTAGGCCAGATAGGAGATTGTTTTCTCTAAAGCAGATTGAATGTCAACCTATGTATAACCCCACCTACAAGGTTGATGACAAGATAGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTTTGCAGGTAGCCCGGAAACAACTGAAAGTCCATTATGATGATGTTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTCAAGTTGGCCAAGCCTGATAAACTTGGGATGAGGCATTCTGGCCGGCCCACCATCAGGCCAGCTCCAACTTATGAGGAACAAGAGCTGGCCATTGAGGTTGGAACTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAACTAGAAATGACAACTGCGGTGATGATAGTGTTCAAGTCTACTTTCCTGGTGAAAGCTTGCTAAAGAAAGTGCGCAAGAAGGATTTAAGAATTTCTAGAGATTGGTTAGGGGACAGGTGGATTAATATTAAGTCAAAGCCTGATATAACCTCGACTATATTTACTGATAATAACTTTAACACAAAGCTTTCCATGTCCCCATCTAAGGCTAAAGATGTGGACTCTGTTGGTTTTGCTAATTCATGTCATGACGTTCTTCCTTGTAAGAATTCTAATGAACTTGATGCTGAAGAGAAATTTGTGAGTTTTGATGGTGTTGCTGAAGATGGGGACTGTGTTCATGATAATAAACCCCCTTCAGAAAAAAGTACCCAAGTTGATGATGTTGAGATACGTGGCAGTTGTGATAATGAAGATTATGGTGGTGATAATGATAGGGACAACAATGATAATGGTGACAACATGAATTGTAATAATGATAATATGGATGTGGAGGTGTCAGGAACATCTGGACCGGACTGTAAAGCTGTAGAACTCATGGAAGTGGATGTGTAA 1575 0.4152 MVFLSHIYILSDIQIRSFVFVMGKGEKHYIAYLEDMYEDRRGQKKVKVRWFHHNQEVKGARNPHPREIFITPYSQVISAECVDGPATVLTREHYEKCMPSFSPTSTDRIHLCFRQFRGNKVKPFDLSKLRGYYAQPVLSCLHLDTIQNTDSKSNSLTGEDEDLNISDDTKLGAKRSRSDKGSPQSQIGRQGVRKLVRSKQMMVYETFQVVNYARPDRRLFSLKQIECQPMYNPTYKVDDKIELLCQDSGIRGCWFRCTVLQVARKQLKVHYDDVQDEDGSGNLEEWIPAFKLAKPDKLGMRHSGRPTIRPAPTYEEQELAIEVGTAVDAWWSDGWWEGVVTRNDNCGDDSVQVYFPGESLLKKVRKKDLRISRDWLGDRWINIKSKPDITSTIFTDNNFNTKLSMSPSKAKDVDSVGFANSCHDVLPCKNSNELDAEEKFVSFDGVAEDGDCVHDNKPPSEKSTQVDDVEIRGSCDNEDYGGDNDRDNNDNGDNMNCNNDNMDVEVSGTSGPDCKAVELMEVDV. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02940 524 MobiDBLite consensus disorder prediction 450 490 - -
Seca6g02940 524 MobiDBLite consensus disorder prediction 151 190 - -
Seca6g02940 524 ProSiteProfiles BAH domain profile. 11 127 IPR001025 GO:0003682
Seca6g02940 524 Pfam BAH domain 18 112 IPR001025 GO:0003682
Seca6g02940 524 SMART BAH_4 11 127 IPR001025 GO:0003682
Seca6g02940 524 Gene3D - 6 125 IPR043151 -
Seca6g02940 524 MobiDBLite consensus disorder prediction 450 512 - -
Seca6g02940 524 CDD Tudor_Agenet_AtDUF_rpt1_3 235 312 - -
Seca6g02940 524 Pfam Agenet domain 238 312 IPR008395 -
Seca6g02940 524 SMART agenet_At_2 319 377 IPR014002 -
Seca6g02940 524 SMART agenet_At_2 233 298 IPR014002 -
Seca6g02940 524 MobiDBLite consensus disorder prediction 163 177 - -
Seca6g02940 524 MobiDBLite consensus disorder prediction 491 506 - -
Seca6g02940 524 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 234 443 - -
Seca6g02940 524 CDD Tudor_Agenet_FMRP-like_rpt2 323 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02940 Seca-Chr6 95082887 95085653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02940 247 375 PHD Transcription Factor Family AT5G58610 31.111 2.18e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02940 - - gmx:100809407 764.992