Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02934 ATGGACTGTCGGCGACCACCATTTCCCCAGCAACCCAGCGGCGGAAGTCTTCCGCAGCCGAGTCTGCTCCGCTCGTGCTCCGTCTCTCACACACAGCAGCGTTGCCTTCTCCGACAAAGGGCGACCTTCTCGTGCGCCGCTTCTCCGACAAAGGGCGACCTTCTCGCGCTCGGTCTATCACAGCGATTGTCTTCTCCGACGAGCGTCCCTCTCGCTGCGACCCTCTTCCTGGCTGTACTGGCAACTTATATTGCTTTCTTCCATTGTTCATGCCGCAGACAGGATGTACTATTCTTAGATAATGAAATTTCCTTCAATGAGGCTATCATTAAGGAAAGAGAGCAGGGCATTCAAGAAATTCAGCAGCAAATTTGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGGCCAACATTGAGCATTCCCATGAAGCAACTATACAAGCAAAATCTCAACTTGTGAAAGCTTCAAAGACACAAAGATCAAATTCGTCTTTGGTACATATAAGTTTTCTTATTTGTGATTGGATTATTGATTTTAAGTTTCTTATTCCTCCCATCACATAA 606 0.4604 MDCRRPPFPQQPSGGSLPQPSLLRSCSVSHTQQRCLLRQRATFSCAASPTKGDLLALGLSQRLSSPTSVPLAATLFLAVLATYIAFFHCSCRRQDVLFLDNEISFNEAIIKEREQGIQEIQQQICEVNEIFKDLAVLVHEQGAMIDDIGANIEHSHEATIQAKSQLVKASKTQRSNSSLVHISFLICDWIIDFKFLIPPIT. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02934 201 FunFam Syntaxin-22 like 100 197 - -
Seca6g02934 201 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g02934 201 SMART tSNARE_6 102 169 IPR000727 -
Seca6g02934 201 SUPERFAMILY SNARE fusion complex 97 170 - -
Seca6g02934 201 Pfam SNARE domain 144 187 IPR000727 -
Seca6g02934 201 ProSitePatterns Syntaxin / epimorphin family signature. 113 152 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca6g02934 201 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 107 169 IPR000727 -
Seca6g02934 201 PANTHER SYNTAXIN 93 183 IPR045242 -
Seca6g02934 201 Gene3D - 102 197 - -
Seca6g02934 201 CDD SNARE_Qa 127 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02934 Seca-Chr6 95039661 95041143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02934 91 180 SNARE and Associated Proteins AT5G46860 71.111 7.31e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02934 - - psat:127135848 136.346