Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02928 ATGGCCAGCAATGGTGCAAAGGAGCCTTTGCTGTCATGGTCACTGGATCCTGCAACTCAAAAGACTAAAAGGCAGTTAAGAAAGAGAAGGTATCTCCGTTCAAGAAGTGCTCCTCTTGCTAATGTTGCTCCTCCTGAGACAAATGGAAATGTATCAATTCCACGTTTTAAGTCCATATTTGGGAAATTGAATCCAAGCTTTAGAGAAGTGGCTATATACTTTGCAGTGTATTTAGGTATAGGAGTTGTAATCTTCTACCTTGTTAGGAACCAGATCAAAGGGAAGAAAACAGTTGGGGTTCTTGATGCTTTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCCAATAGTACCCTTACAAAACTACTTGCCTGTGCTTTTGTTTTCACTGGAATGGCATTGATTGGACTAATCCTGACCAAAGCAGGAGATTACTTGGTTGAGAAACAGGAAGTTTTGCTAATTAAAGCTATGAACATAGGCCAAAAAGTTGGTCCAACTGAAATTTTAAAGGAGGTTGAGATCAATAAAACAAGATTCAAATTTTTTCTAGTCCTTTTCCTTCTTTTGATTCTCATTGCCACAGGGACAGCATTCTTGGTCATTGTTGAGAATTTGGATATTATTGATGCCTTCTACTGCGTTTGTTCTACATTTACAACTCTGGGGTATGGTGACAGAAGTTTCTCAACTCAAGCAGGAAGAGTATTTGCAGTGTTTTGGATATTGGCAGGTACTATTTGTTTAACTCAGCTTTTCCTCTGCATTGCTGAGCTAAACACTGAAAGCAAACAGAAGGCAATTGTCAAATGGGTTCTTACAAGGAAGATGACCAATTTAGATTTGGAGGCAGCAGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTCATCATTTATAAGCTCAAAGAAATGGGGAAGATTAGTCAAGAAGACATTTCACTTGTCTTGCAGGAGTTTGAAGAGCTTGACATTGATCAGTATGGTACACTGTCAATTTCTGATTTAACACTTGCTCAGTCATCTTAA 1050 0.3905 MASNGAKEPLLSWSLDPATQKTKRQLRKRRYLRSRSAPLANVAPPETNGNVSIPRFKSIFGKLNPSFREVAIYFAVYLGIGVVIFYLVRNQIKGKKTVGVLDALYFTIVTMTTVGYGDLVPNSTLTKLLACAFVFTGMALIGLILTKAGDYLVEKQEVLLIKAMNIGQKVGPTEILKEVEINKTRFKFFLVLFLLLILIATGTAFLVIVENLDIIDAFYCVCSTFTTLGYGDRSFSTQAGRVFAVFWILAGTICLTQLFLCIAELNTESKQKAIVKWVLTRKMTNLDLEAADLDEDGTVGAAEFIIYKLKEMGKISQEDISLVLQEFEELDIDQYGTLSISDLTLAQSS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02928 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Seca6g02928 349 Gene3D - 68 163 - -
Seca6g02928 349 SUPERFAMILY Voltage-gated potassium channels 181 283 - -
Seca6g02928 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 76 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g02928 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Seca6g02928 349 SUPERFAMILY EF-hand 282 346 IPR011992 -
Seca6g02928 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g02928 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca6g02928 349 SUPERFAMILY Voltage-gated potassium channels 66 157 - -
Seca6g02928 349 Pfam Ion channel 73 153 IPR013099 -
Seca6g02928 349 Pfam Ion channel 194 265 IPR013099 -
Seca6g02928 349 Gene3D - 172 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02928 Seca-Chr6 94949987 94952956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02928 44 349 Ion Channels AT5G55630 62.092 6.19e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02928 K05389 - gmx:100777388 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02928 6 94949987 94952956 Seca6g02928 6 94949987 94952956 ECH