Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02916 ATGGCGGACTCGGACAACGATTCCGGCGGGGCGCATAACGCCGGCGGAAACGCTCAAGGCAGCGAGTTGTCACCGAGAGAACAGGATCGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCAAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGACCTGCTGTGGGCCATGACCACGCTTGGCTTCGAGGACTACGTCGAGCCTCTGAAGGTTTACCTTCAGCGCTTCAGGGAGATGGAAGGGGAGAAGAGCGTAGCGGCGCGTGACAAGGACGCTCCTCCTAATGCTAACAGTCCCTTCGAGAGTGGTAGTTATGGTGGTGGAATGATGATGCATCAGGGACACGTATACGGTTCTGGTGGATTCCATCAAGTGGCTGTGACTGGTGGTAGTACCCTTATGGGTAAGGGTGGGCCTGGTTATCCTGGGCCTGGATCTAATGCAGGTAGACCCAGATAG 573 0.5777 MADSDNDSGGAHNAGGNAQGSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDKDAPPNANSPFESGSYGGGMMMHQGHVYGSGGFHQVAVTGGSTLMGKGGPGYPGPGSNAGRPR. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02916 190 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Seca6g02916 190 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Seca6g02916 190 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Seca6g02916 190 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Seca6g02916 190 MobiDBLite consensus disorder prediction 122 142 - -
Seca6g02916 190 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Seca6g02916 190 MobiDBLite consensus disorder prediction 167 190 - -
Seca6g02916 190 Gene3D Histone, subunit A 20 138 IPR009072 GO:0046982
Seca6g02916 190 MobiDBLite consensus disorder prediction 1 29 - -
Seca6g02916 190 MobiDBLite consensus disorder prediction 10 24 - -
Seca6g02916 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Seca6g02916 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca6g02916 190 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02916 Seca-Chr6 94733411 94733983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02916 1 155 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.457 3.23e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca6g02916 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02916 K08065 - gmx:100813580 305.449