Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02905 ATGAAAAGCTTTCTTGGGTTTGGTTCAGGTTTATTCCCCTTGCAACAAACAAATTCCTCTGCAAACACAGGAGTTCCAACTTCAATCAACTCAGGCAATGATGGTGTTGTTCCCCATCCAGCCATGCGAGACAAGAATGTCGTTTCAATTACAAGTGTGACAAAAATCATGAGACAAATTCTTCCATTAAATGCAAAAATCTCAGATGATGCTAAGGAGATGGTTCAACAAAGTGTTTCAAAGTACATAAGCTTTGTAACTAGAAAAGCCATGGAGCGATGCCAAAGCGAGTGCAGAAAGATCATGAAAGTAGAGGACCTGTTATGGGGCTTAGAGAATCTAGGATTTTCTTACTATATTGAGCCACTCACTCTTTATCTTCAACGCTATCGCCAAATTCAAAATGACCTCCAAAAACCTCGTGAAGAGCTTATTTCAACAAATGCAGAGCAAAGCATGGATAATAATGGGTCTTTTTCTAAGCCTAGTGTTGGGGATCCTCAGCTAACCTTACCACCACCGCCACCTACTTCTTTTGGGCCAGATTTTTTGAATGATCCAAATACAAATTTGGAAATTTTAGATTCAATGAACTTGGATGATTTCGATGGAATTGGATTAGATGTTGGCTACTCAGACAATGTTTTGACCAACTTTGATCCTTTTGCTCACTTCAATGAAGATGGCCTGTGA 693 0.3939 MKSFLGFGSGLFPLQQTNSSANTGVPTSINSGNDGVVPHPAMRDKNVVSITSVTKIMRQILPLNAKISDDAKEMVQQSVSKYISFVTRKAMERCQSECRKIMKVEDLLWGLENLGFSYYIEPLTLYLQRYRQIQNDLQKPREELISTNAEQSMDNNGSFSKPSVGDPQLTLPPPPPTSFGPDFLNDPNTNLEILDSMNLDDFDGIGLDVGYSDNVLTNFDPFAHFNEDGL. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02905 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 44 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca6g02905 230 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Seca6g02905 230 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Seca6g02905 230 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Seca6g02905 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 109 IPR003958 -
Seca6g02905 230 MobiDBLite consensus disorder prediction 149 185 - -
Seca6g02905 230 MobiDBLite consensus disorder prediction 167 181 - -
Seca6g02905 230 MobiDBLite consensus disorder prediction 149 165 - -
Seca6g02905 230 Gene3D Histone, subunit A 41 161 IPR009072 GO:0046982
Seca6g02905 230 SUPERFAMILY Histone-fold 50 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02905 Seca-Chr6 94429632 94430324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02905 33 180 CCAAT-HAP3 Transcription Factor Family AT1G21970 45.161 7.25e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca6g02905 CBFD_NFYB_HMF 5.5e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02905 K08065 - qlo:115956131 129.028