Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02904 ATGTCTCCGACAACCACCATCATGTTCTTCTTCTTCTTATTCTTACCCTCAATCACACTTTCACAGAACATTACCTTCAACTTCCCCTCCTTCACTCTCCGCAACATCACCCTCCTCGGCGACTCCTTTCTCCGTGACGGCGTCATCGGCCTCACCCGCTCCACCGCCGTCCCCGCCTCCAGCTCCGGCGCCCTCCTCTACAACAACCCCATCATCTCCAACGCCACCTCTTCCTTCTCAACCACCTTCTCTTTCTCCATCACCAACGCCACCTCTCCCTCCTCCTCCGGCGACGGCTTCGCCTTCTTCCTTTCCCCACACAACAACCTTTCCGAAACCCCCGGCGCATTCCTCAACTCCTCCCAACCCACCCACTTCATCGCCGTCGAGTTCAACACCAACGACAACCACGTTGGTTTGAACTTAAACACCTCAAATTCGATCGAAACCAGTGATCCAACTTTGCAGGACATCGATCTCAAAAGCGGGAACTTGATCACTTCTTGGGTTGATTACGATGGTGTTAAGAAAAACCTCAGTGTTTTCTTAAGCTATTCCAATTCAAGTTCGAGTTTGAGTCCTTCCAAGCCTGAAAAACCGATCTTGAGCGTTGATGTTGATCTTTCTGAGTATTTCAAGGAGATTCTCTATGTGGGGTTTTCGGGTTCTACTGAAGGAAGCACCGAGCTTTACCAAATCATGAGTTGGAGCTTTGAGTCGTTTCAGCTTCTCGTTCCTCAAAAACCAAACTTGCAAGTGAATCCCCGAAATGGCTCTGGCAACCCCCATAGTGTTGCAGTGGAGGATATTCCTGCTTCAAACTCCACCAGTAACCATCATGGAAAGAGATTCGCAATTGGTTTTTGTGTTGCAATTGTTGGTCCTGCTTTTTTCTGTGTGGTGCTTTTGGTTTTGGGGTATGTTTCTTTTCGGAATCGGAGTGGAACAAGCTTTGTGGCGTGTCCTAAGGAGTTTAGTTACAAGGAGTTGAAATCAGCAACAAGAGGGTTTCATGTTTCGAGGATCATTGGGAATGGATCTTTTGGGACGGTGTATAAGGCCGTGTTTGGGAATGGATCTTCCGGAACAATTGCTGCAGTGAAAAGATCAAGGCATTCCCATGAGGGGAAAACAGAGTTCCTGGCTGAGCTTTCCATAATAGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTCTTAGGTTGGTGTGTTGAGAAAGGTGAATTGTTGCTTGTGTATGAGTTTATGCCTAATGGAAGCTTAGATAAGATTCTTCACCAAGGATCTGAATGTGGTGGCAATTTGTTGAGTTGGTTTCAAAGACATAACATTGTTGTTGGGTTAGCTTCTGTTCTTGCTTATTTGCACCAAGAATGTGAGCAAAGAGTAATTCACAGAGACATTAAGACAGGGAACATATTGCTAGATAGAAACTTCAATCCAAGGTTAGGGGATTTTGGTTTGGCAAAGCTTATGGATCATGATAAGAGCCCAGTTTCCACATTAACTGCTGGAACAATGGGGTACCTTGCTCCTGAGTATCTCCAATATGGAAAGGCAACTGATAAAACTGATGTATTTAGCTATGGAGTGGTTGTGCTTGAAGTTGCTTGTGGTAGGAGGCCAATTGAAAGAGAGGGACAAAAGATGGTGAATTTGGTGGATTGGGTTTGGGGGCTTCACTCTCAAGGGAAGATAATTGAGGCTGCAGATAAAAGGTTGAATGGGGAGTTTGAGGAAGAGGAAATGAGGAAGCTTTTGCTTTTGGGGTTGAGTTGTGCAAACCCAGATAGTGCAGAAAGGCCTTCCATGAGAAAGGTATTACAGATTCTCAGCAATGAAGCAGTGCCTCTTGTAGTGCCTAAAGTGAAACCAAGCCTTACATTCTCTTCTGGCCTTCCATTGACTCTTGATGAAATAGTTTCAGATACTGAGGAAGGGTTCAATTGCAGCCAGCATGTGTGCCAGATAAAAATTGACTGA 1980 0.4561 MSPTTTIMFFFFLFLPSITLSQNITFNFPSFTLRNITLLGDSFLRDGVIGLTRSTAVPASSSGALLYNNPIISNATSSFSTTFSFSITNATSPSSSGDGFAFFLSPHNNLSETPGAFLNSSQPTHFIAVEFNTNDNHVGLNLNTSNSIETSDPTLQDIDLKSGNLITSWVDYDGVKKNLSVFLSYSNSSSSLSPSKPEKPILSVDVDLSEYFKEILYVGFSGSTEGSTELYQIMSWSFESFQLLVPQKPNLQVNPRNGSGNPHSVAVEDIPASNSTSNHHGKRFAIGFCVAIVGPAFFCVVLLVLGYVSFRNRSGTSFVACPKEFSYKELKSATRGFHVSRIIGNGSFGTVYKAVFGNGSSGTIAAVKRSRHSHEGKTEFLAELSIIAGLRHKNLVQLLGWCVEKGELLLVYEFMPNGSLDKILHQGSECGGNLLSWFQRHNIVVGLASVLAYLHQECEQRVIHRDIKTGNILLDRNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLEVACGRRPIEREGQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFEEEEMRKLLLLGLSCANPDSAERPSMRKVLQILSNEAVPLVVPKVKPSLTFSSGLPLTLDEIVSDTEEGFNCSQHVCQIKID. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02904 659 CDD STKc_IRAK 343 610 - -
Seca6g02904 659 SMART serkin_6 337 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02904 659 Pfam Protein kinase domain 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02904 659 Gene3D - 21 241 - -
Seca6g02904 659 SUPERFAMILY Protein kinase-like (PK-like) 315 610 IPR011009 -
Seca6g02904 659 CDD lectin_legume_LecRK_Arcelin_ConA 26 241 IPR001220 GO:0030246
Seca6g02904 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 245 IPR013320 -
Seca6g02904 659 PANTHER - 52 620 - -
Seca6g02904 659 FunFam L-type lectin-domain containing receptor kinase VIII.1 415 628 - -
Seca6g02904 659 ProSiteProfiles Protein kinase domain profile. 337 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02904 659 ProSitePatterns Protein kinases ATP-binding region signature. 343 368 IPR017441 GO:0005524
Seca6g02904 659 Gene3D Phosphorylase Kinase; domain 1 309 414 - -
Seca6g02904 659 Pfam Legume lectin domain 24 241 IPR001220 GO:0030246
Seca6g02904 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Seca6g02904 659 Gene3D Transferase(Phosphotransferase) domain 1 415 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02904 Seca-Chr6 94408775 94410754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02904 1 646 Receptor kinase-like Gene Family AT5G55830 56.997 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g02904 Pkinase 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02904 - - adu:107496163 800.816