Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02890 ATGAATTCCCCATCTCCATCAGAGTTCTTGTTCAATTCAAGCAGCATGGTTTCATTTCCTTCAAATTCTGGAGAAAATAGGCCTCCTAGCTCCTCCCCACCTTCATTTTTGACAAGGGTGGCCATGAGAATTTCTAGATCAAGATGGTTCACCTTTTTAAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTCAATTCTAGCACTTGGATGATGCTAGAGTTGATTGCTTTGATGGTACAGATAACCAGCACAACATTCACTTTGGCCATTTCAAAGAATGAGAAGCCTATTTGGCCTATGAGGATTTGGATAGCAGGTTATGACATTGGTTGTGTCCTTAATCTGTTGCTACTTTGTGGCCGCTACTATCAACTTCATGTGACTCAGGGGGAGGCTCTTAACCTCTCTGATGTGGAGCAGCAAAGAAACAATGAAGAAACAAGTGTGTACAGGAGCTCACGTTTGATGAGTAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCTTTTGACTCACGTTTTGGATCCTTCCAACATGCTCCTAAACTCCACGTGCTCTGCACCATCCTTCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTTCTACTGTTTTTGCTCCTTTGTTGTTGTGTGCCACTAGTTAGCACCCTCCTAGGATACAACATGAACATGGGTTCCTCTGCTAAAGGGGCATCTGAAGATCAAATCTCACAAATTCCAAGTTGGAGATATAAAGTGGCTCATACCAACTTAGACCTTAGCAATGATTCTGAGAGCAGTGAAAGATTGATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTACCTTGTTCACATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCCTGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG 1005 0.4169 MNSPSPSEFLFNSSSMVSFPSNSGENRPPSSSPPSFLTRVAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALMVQITSTTFTLAISKNEKPIWPMRIWIAGYDIGCVLNLLLLCGRYYQLHVTQGEALNLSDVEQQRNNEETSVYRSSRLMSKCRSSLELFFAIWFVMGNVWAFDSRFGSFQHAPKLHVLCTILLAWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNMGSSAKGASEDQISQIPSWRYKVAHTNLDLSNDSESSERLINEDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02890 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 333 IPR013083 -
Seca6g02890 334 Pfam RING-like zinc finger 287 315 IPR001841 -
Seca6g02890 334 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Seca6g02890 334 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 332 - -
Seca6g02890 334 SUPERFAMILY RING/U-box 279 332 - -
Seca6g02890 334 SMART ring_2 288 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02890 Seca-Chr6 94237084 94240860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02890 22 332 C3H Transcription Factor Family AT4G26580 68.269 2.61e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02890 - - gmx:100818715 575.474