Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02880 ATGCTTTGTGACACATATGTATTAGATTGTTGCATTTGTTCTGAACCTTTGAGTCATCCTGTCTTCCAATGCATCAATGGTCACATTGCTTGTGGTACATGTTGTTCCAAAGTTATGAATAAGTGCAACATGTGCCCTATGCCCATCCACATCCGTTGTCGTGCTATAGAGAAAGTGTTGGAATCTATCAAAATTGCATGTGATAATACAGAATATGGCTGTGATGTGGTAGTGAGGTATAGTGAAAGACATACACATGAGAAGACATGCATCTTCAAACCATGTTTATGTCCACATGTAGGTTGTGACCTTTTTACAGATTCCAAGGAGTTAGCCTTACATTTCAAGACAGAACATCAGCCCAGTGAACCACCCTTTAAATATGGTGAAGTTTTTGTTACCTCATTATGTCCTAATGAGAATATTGTTGTTCTTCAAGCACTAGAAGATGACAAACTATTTGTTATCAACAACAAGGCTGAGTCTCTTGTCAACATACTCACTCTTTATCACATTGGGCCTAATACAGTGACATCAGAGTTTCATTTTAAAATGGTGGTTAGGTCTCAACAAGGGAATAACTCTATATTGCTAGAGTCAGAAGTTGAGAACATTCAAGACCTACAATCAGAAGAGGACAACATACAAGACTGCACTTCTGCATCATCATCAGGGTCCCTTTATGTTCCATTTGAATTTTTTCAACCTTGTGGACGAGTCAAGTTAGAAATTTGCATAAGTATGATTGGTGCTGCACAAGCAGGAGACAATCCATAG 777 0.3835 MLCDTYVLDCCICSEPLSHPVFQCINGHIACGTCCSKVMNKCNMCPMPIHIRCRAIEKVLESIKIACDNTEYGCDVVVRYSERHTHEKTCIFKPCLCPHVGCDLFTDSKELALHFKTEHQPSEPPFKYGEVFVTSLCPNENIVVLQALEDDKLFVINNKAESLVNILTLYHIGPNTVTSEFHFKMVVRSQQGNNSILLESEVENIQDLQSEEDNIQDCTSASSSGSLYVPFEFFQPCGRVKLEICISMIGAAQAGDNP. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02880 258 ProSiteProfiles Zinc finger SIAH-type profile. 62 120 IPR013010 GO:0008270
Seca6g02880 258 Pfam Seven in absentia protein family 51 220 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca6g02880 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 115 IPR013083 -
Seca6g02880 258 SUPERFAMILY TRAF domain-like 62 205 - -
Seca6g02880 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 249 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02880 Seca-Chr6 94077316 94078092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02880 7 120 C3H Transcription Factor Family AT2G41980 35.043 1.68e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02880 K04506 - aew:130768762 212.616