Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02872 ATGCCTGGAAGCTTAAGGAATCTCTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTTTCATTAAACTCTCTTCTCTTTCCATGTTGTTACTCTCTTAATGAACAAGGCCAAGCTCTTATAGCATGGAAGAACAGTTTAAACAACACTGTAGATGCATTAGCATCATGGAATCCTTCAGCCTCAAGTCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGATGTGATAGAGATAAACCTGAAAGAAGTGAACTTGCAAGGCTCATTACCTTCAAATTTTCAATCTCTAAGGTCCTTGAAGACTCTTATCCTCTCATCAAACAACATCACAGGCAGGATTCCAAAAGAGATTGGAGACTATCAAGAACTTATCTTTGTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATACCAGAAGAAATTTGTAGGCTAAGGAAACTGCAGAGTTTGTCTCTTCATACAAACTCACTTGAAGGCAATATTCCATCCAACATTGGAAACCTATCAAGTCTTGTGAACTTGACACTCTATGACAATCACTTGAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAAGCAACCTCCAAGTATTCAGAGCTGGTGGAAATAAAAACCTCAAAGGTGAGATTCCATGGGATATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTCTTCCTTCTTCAATCAGAAAGCTGAAAAGAATCAAGACCATGGCCATTTACACAACTCTATTGTCAGGCTCCATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGCAGAATTTGTACTTGCATCAGAATTCTATCTCAGGTTCAATCCCAAGCCAAATTGGAGAACTCAGCAAGCTCAAGAGTCTACTTTTATGGCAAAACATTATAGTAGGTACAATCCCAGAAGAGCTTGGAAATTGCAAAGAGATGCAAGTCATAGACTTATCAGAAAATCTTCTCACAGGTAGCATACCAAAGAGTTTTGGTCAGCTTTCAAATCTCCAAGAGCTTCAACTGAGTGTCAATCAGCTCTCAGGTATAATACCTCCTGAAATTTCAAATTGCACTTCTCTGACTCAATTGGAAGTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGCAACTTGAGAAGCTTAACTCTGTTCTTTGCCTGGCAGAACAAGCTAACAGGAAAAATCCCAGATAGTCTTTCTGAGTGCCAAGACCTTCAGGCACTTGATCTGTCTTACAACAATTTGATTGGTCCAATTCCAAAACAACTATTTGGGTTGAGGAATCTTACCAAAATTCTGCTTCTTTCCAATGATTTATCAGGCTTTATACCACCTGATATAGGCAACTGTACAAACCTTTACAGGCTGCGTTTGAATCACAATAGACTTGCAGGTAACATTCCACCTGAGATAGGCAACTTGAAAAGTTTGAATTTTGTGGATATGAGTAACAATCATCTTGTTGGGGAGATTCCTTCAACACTATCTGGATGCCAGAATCTTGAGTTTTTGGACCTTCATTCCAATAGTCTCACTGGTTCTGTTCCAGATTCTCTGCCTAAAAGCCTTCAGTTGATTGACTTGTCAGACAATAGGCTAACAGGTGCATTGAGTCACACCATTGGTTCATTAATTGAGTTAACCAAACTCAACTTGGGAATGAATCAATTAAGTGGAAGAATCCCAGCAGAGATCTTATCTTGCACTAAGCTACAACTTCTAGACTTGGGAAGCAATAGTTTCACTGGAGAAATACCAAAGGAAGTGGGACTAATTCCTTCACTAGAAATCTCTCTCAACCTTAGCTGCAACCAGTTTTCTGGTGAAATTCCATCTCAGTTCTCTAGTCTTAGCAAACTAGGAGAGCTTGATCTCTCACACAACAAGCTCTCAGGGAATTTAGATGCTCTCTCAGACCTCCAGAATCTTGTTTCCTTGAATGTTTCCTTCAATGGCTTCTCTGGTGAATTGCCTAACACACCATTCTTCCATAAACTCCCTCTTAGTGATCTTTCTGAAAATGAAGGTCTCTATATTGCTGGGGGTGTTGTAACTCCTGGTGACAGAATGGAAAGCAAAGGTCATGTTAGATCAACAATGAAGTTCATTATGTCCATTCTGTTAAGCACCAGTGCAGTACTAGTGCTGCTCACAATCTACATCTTGGTTCGTACTCATATAGCCAACAAGGCACTCATGGAAAATGAAAATTGGGAGATGACTTTGTATCAAAAGTTAGAATTCTCCATTGATGACATTGTCTTGAATTTGACATCAGCTAATGTTGTTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTGACAATTCCAAATGGTGAAACACTAGCAGTTAAAAAGATGTGGTCATCAGAAGAATCTGGAGCATTCAATTCTGAAATTCAAACCTTGGGGTCAATCAGACACAAGAATATCATCAGGCTTCTGGGTTGGGGATCCAATAAGAACCTGAAGTTGCTGTTTTATGACTACCTTCCCAATGGAAGCCTGAGCTCATTACTTCATGGTTCAGGTAAGGGAAAAGCAGAATGGGAAACAAGATATGATGTTGTATTAGGTGTGGCTCATGCACTTTCATATTTGCATCATGACTGTGTGCCTGCTATAATGCATGGAGATGTCAAAGCCATGAATGTGCTATTAGGTCCTGGTTATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAATTGCAACTCAAAATGATGAAAATACTGATTCCAAGCCAGTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCAACAATGCAGCCTATCACTGAGAAGAGTGATGTGTATAGTTATGGTATAGTTTTACTTGAGGTCCTTACAGGAAGGCACCCTTTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCATTTAGCTAGCAAAGGAGACCCTTCTGATATTCTTGACACAAAGCTTAGAGGAAGGGCTGACCCTACCATGCATGAAATGCTACAAACTTTAGCAGTGTCATTTCTATGTGTAAGCACAAGAGCTGATGACCGTCCAACAATGAAAGATGTTGTTGCAATGCTCAAGGAAATTAGACCTGTTGAGACCTCAAGATCAGACCCTGATGCATGGAAAGGAGGTTTGACAGCACATAGTTCTCCACCACCTCCTAAGAAAGTAGTCCCACATGGATCTTCTACATGTTCCTATAATTTCTCAGATGATTCAACAAGTTGA 3282 0.4074 MPGSLRNLSLSPKIFSFTLLLSLNSLLFPCCYSLNEQGQALIAWKNSLNNTVDALASWNPSASSPCNWFGVYCNSQGDVIEINLKEVNLQGSLPSNFQSLRSLKTLILSSNNITGRIPKEIGDYQELIFVDLSGNSLFGEIPEEICRLRKLQSLSLHTNSLEGNIPSNIGNLSSLVNLTLYDNHLSGEIPKSIGSLSNLQVFRAGGNKNLKGEIPWDIGNCTNLVMLGLAETSISGSLPSSIRKLKRIKTMAIYTTLLSGSIPEEIGNCSELQNLYLHQNSISGSIPSQIGELSKLKSLLLWQNIIVGTIPEELGNCKEMQVIDLSENLLTGSIPKSFGQLSNLQELQLSVNQLSGIIPPEISNCTSLTQLEVDNNALSGEIPDLIGNLRSLTLFFAWQNKLTGKIPDSLSECQDLQALDLSYNNLIGPIPKQLFGLRNLTKILLLSNDLSGFIPPDIGNCTNLYRLRLNHNRLAGNIPPEIGNLKSLNFVDMSNNHLVGEIPSTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLTGALSHTIGSLIELTKLNLGMNQLSGRIPAEILSCTKLQLLDLGSNSFTGEIPKEVGLIPSLEISLNLSCNQFSGEIPSQFSSLSKLGELDLSHNKLSGNLDALSDLQNLVSLNVSFNGFSGELPNTPFFHKLPLSDLSENEGLYIAGGVVTPGDRMESKGHVRSTMKFIMSILLSTSAVLVLLTIYILVRTHIANKALMENENWEMTLYQKLEFSIDDIVLNLTSANVVGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVVLGVAHALSYLHHDCVPAIMHGDVKAMNVLLGPGYQPYLADFGLARIATQNDENTDSKPVQRHYLAGSYGYMAPEHATMQPITEKSDVYSYGIVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRADDRPTMKDVVAMLKEIRPVETSRSDPDAWKGGLTAHSSPPPPKKVVPHGSSTCSYNFSDDSTS. 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 531 608 IPR032675 -
Seca6g02872 1093 MobiDBLite consensus disorder prediction 1050 1093 - -
Seca6g02872 1093 SUPERFAMILY L domain-like 572 672 - -
Seca6g02872 1093 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Seca6g02872 1093 PANTHER UNNAMED PRODUCT 301 973 - -
Seca6g02872 1093 SMART LRR_typ_2 628 651 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 555 579 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 148 172 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 293 317 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 485 509 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 100 124 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 341 365 IPR003591 -
Seca6g02872 1093 SMART LRR_typ_2 437 461 IPR003591 -
Seca6g02872 1093 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02872 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Seca6g02872 1093 FunFam Leucine-rich receptor-like protein kinase family protein 336 608 - -
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 609 692 IPR032675 -
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 430 530 IPR032675 -
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Seca6g02872 1093 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Seca6g02872 1093 MobiDBLite consensus disorder prediction 1079 1093 - -
Seca6g02872 1093 FunFam Leucine-rich receptor-like protein kinase family protein 34 192 - -
Seca6g02872 1093 SUPERFAMILY Protein kinase-like (PK-like) 766 1043 IPR011009 -
Seca6g02872 1093 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 192 333 IPR032675 -
Seca6g02872 1093 ProSiteProfiles Protein kinase domain profile. 768 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02872 1093 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 193 284 - -
Seca6g02872 1093 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1060 - -
Seca6g02872 1093 SUPERFAMILY L domain-like 32 306 - -
Seca6g02872 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 737 841 - -
Seca6g02872 1093 Gene3D Phosphorylase Kinase; domain 1 733 841 - -
Seca6g02872 1093 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Seca6g02872 1093 Pfam Leucine rich repeat 609 663 IPR001611 GO:0005515
Seca6g02872 1093 Pfam Leucine rich repeat 320 378 IPR001611 GO:0005515
Seca6g02872 1093 SUPERFAMILY RNI-like 286 607 - -
Seca6g02872 1093 PRINTS Leucine-rich repeat signature 628 641 - -
Seca6g02872 1093 PRINTS Leucine-rich repeat signature 534 547 - -
Seca6g02872 1093 SMART serkin_6 768 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02872 1093 Gene3D Ribonuclease Inhibitor 334 429 IPR032675 -
Seca6g02872 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 694 - -
Seca6g02872 1093 Pfam Leucine Rich repeat 100 115 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02872 Seca-Chr6 94026362 94030599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02872 31 1092 Receptor kinase-like Gene Family AT5G56040 67.880 0.0 1440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g02872 Pkinase 8.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02872 - - gmx:100802880 1930.61