Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02868 ATGTTTTTGTACTTCTGTTATGATGTATCATCAGATGCTTTTGATACCGAGGAATTGCTACATGTTATGGACAAGTTGAAGCGTGGCGAAGCTGTAGATATCCCGAAGTATGATTTTAAGAGTTACAAGAGTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTAGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTGTTGAGAAGGGTCGGGATATTGGAACAGTCCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCAAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGACAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGATTGGTTGTAGAACATGGATTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGATTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGCATGGAGAATGCTTTAAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGGCATGTGTTATTGTTGGACCCTATCCTCGGCACAGGTAATTCGGCGGTTCAAGCAATCTCTTTACTTATAAAAAAGGGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTCTGCAAAAGTTTTCCAAGAATTAAAATAGTGACATCTGAGATTGAGATTGGTTTGAATGAAGATTACCGAGTCATACCAGGAATGGGTGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGTTGAACAAGATGTTGTTCCTTCACAGTAG 1152 0.3915 MFLYFCYDVSSDAFDTEELLHVMDKLKRGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTDSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDYRVIPGMGEFGDRYFGTDDDVEQDVVPSQ. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02868 383 Pfam Uracil phosphoribosyltransferase 170 371 - -
Seca6g02868 383 SUPERFAMILY PRTase-like 155 372 IPR029057 -
Seca6g02868 383 FunFam Uridine kinase 156 371 - -
Seca6g02868 383 Gene3D - 7 155 IPR027417 -
Seca6g02868 383 PRINTS Uridine kinase signature 84 94 - -
Seca6g02868 383 PRINTS Uridine kinase signature 98 109 - -
Seca6g02868 383 PRINTS Uridine kinase signature 29 44 - -
Seca6g02868 383 PRINTS Uridine kinase signature 120 133 - -
Seca6g02868 383 Pfam Phosphoribulokinase / Uridine kinase family 10 140 IPR006083 GO:0005524|GO:0016301
Seca6g02868 383 CDD UMPK 12 152 IPR000764 -
Seca6g02868 383 CDD PRTases_typeI 229 344 IPR000836 -
Seca6g02868 383 FunFam Uridine kinase 4 155 - -
Seca6g02868 383 Gene3D - 156 371 IPR029057 -
Seca6g02868 383 PANTHER URIDINE KINASE 12 281 - -
Seca6g02868 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 145 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02868 Seca-Chr6 93959836 93964142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02868 12 374 PRT Gene Family AT4G26510 90.358 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02868 K00876 - gmx:100792258 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02868 6 93959836 93964142 Seca6g02868 6 93959836 93964142 ECH
Seca6g02869 6 93964472 93967028 Seca6g02868 6 93959836 93964142 PCT