Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02857 ATGAGCGATTCTGCATACAAGGTTGAAACCACACCACGTCTTGCTCAATGGAGAATCGAAAACTTGTCTTCTTGCACATACCGCAAATCCGATCCTTTCAAGATCGGCAAGTGGAATTGGTATTTGTCGGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTCCCAGAAACATCCAATCTAACGAGAGAAAATCCCCCAATTGCATCTTTTATCGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGGCCCTCACACATCCAGAAATAAAGGACAAATTGATCAAGAACAATGAGGACTTTGTTTGGGCAATTGAGGTTCCACTGACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACCACATCCCCAAACGGTGGAGAACCTTGCTCTATCTGGGCTGAAGGTTTTACTCAGAAAAGATCAAATGCAAAAGCAATAGAGTCTCTTGGTAGAATGCTAACAGAAGGCATCCACACAGACATAACCATCAATGCTTCTGATGGAAGCATAGGAGCTCATCGAGCTGTTCTTGCTGCCAGGTCACCTGTATTCCGCAGCATGTTCTCACATAATCTTCAGGAGAAAGAGCTTTCAACCATAAACATCTCAGACATGTCAATTGAAGCTTGCCAAGCTTTTCTCAATTATCTTTATGGCATCATCAAAAATGAAGAATTTCTCACACATAGGCTTGCCCTTCTACATGCAGCTGACAAGTATGACATATCTGACTTGAGAGAGGCATGCCATGAGAGTCTTCTAGAAGACATTGATACAAAAAATGTACTTGAGAGGCTCCAAAATGCATCACTATATCAGCTGATGAAACTGAAGATGAGCTGTATCCGATACCTTGTGAAATTTGGCAAAATATTTGAAATTAAGGATGATTTCAATACCTTCCTGCAAAATGCAGACAGGGATCTCATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 987 0.4124 MSDSAYKVETTPRLAQWRIENLSSCTYRKSDPFKIGKWNWYLSVEKNRVLFVKLFPETSNLTRENPPIASFIVRVVSSVGDRKALTHPEIKDKLIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTTSPNGGEPCSIWAEGFTQKRSNAKAIESLGRMLTEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSIEACQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIFEIKDDFNTFLQNADRDLIAEVFHEVLDAWKGF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02857 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Seca6g02857 328 SUPERFAMILY POZ domain 149 259 IPR011333 -
Seca6g02857 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Seca6g02857 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Seca6g02857 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Seca6g02857 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Seca6g02857 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02857 Seca-Chr6 93846369 93850163 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca6g02857 BTB 3.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02857 K10523 - gmx:100790186 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02857 6 93846369 93850163 Seca6g02857 6 93846369 93850163 ECH
Seca6g02857 6 93846369 93850163 Seca6g02760 6 92491549 92496367 PCT