Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02855 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTAGAAAATGTCAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAACTTCTGTTTAATGGGAAGGAGATGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTCTCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGTTCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAATGACCCAGAGTTGGCACAAGGTATTCTAGGGAATGATCTCAATAGATTGCAAGAACTTTTACGAATGCGCCATCGCCAGAGAGAAGAATTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGCAGCTGCACTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATAATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTCGGCCAATCAGAAATATTGGGTCGAATACATGTAGCTCCTATCAAGATTGGGAATATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGATTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTAAAAGAAAGTGTTCTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAATATTCCAAGGAAGCTTCAAGCTCAGGTGGCCCAGTAAGTATACTTTTCATTGTGTGTCATGAAGCCACTACCCCGTTGAAACTGTAA 1074 0.4227 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEMRNSEKLSALGVKDDDLLMMVSGAAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQNDPELAQGILGNDLNRLQELLRMRHRQREELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYSKEASSSGGPVSILFIVCHEATTPLKL. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02855 357 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 334 - -
Seca6g02855 357 PRINTS Ubiquitin signature 32 52 IPR019956 -
Seca6g02855 357 PRINTS Ubiquitin signature 11 31 IPR019956 -
Seca6g02855 357 FunFam DNA damage inducible 1 homolog 2 175 322 - -
Seca6g02855 357 Gene3D Acid Proteases 176 322 IPR021109 -
Seca6g02855 357 SMART ubq_7 1 72 IPR000626 GO:0005515
Seca6g02855 357 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Seca6g02855 357 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Seca6g02855 357 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Seca6g02855 357 Gene3D - 1 83 - -
Seca6g02855 357 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Seca6g02855 357 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Seca6g02855 357 Coils Coil 127 150 - -
Seca6g02855 357 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Seca6g02855 357 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02855 Seca-Chr6 93826791 93834178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02855 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 30.000 7.15e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02855 K11885 - gmx:100779464 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02855 6 93826791 93834178 Seca6g02855 6 93826791 93834178 ECH