Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02853 ATGCTGCTGGTGGATGAAGAGGAGGTAAGAATTCATGCATATGTGAAAAAAGCGTTGATTACAACATTTGAAGGAACTTTGAAAGAAGGCATTGCTTATGTAATGGAAAATCTGTTAGTTGCTGAAAATAAGATGAAGTTCAAAACCACCAGCCATGCATATAAGTTCGGGTTTATGCAAAGCACTCGAGTAACTGAAATTGAAGCTGACAATATTCCATCACATTCGTTCCTCTTTGTGCCATTTCTTGATATCCTGGCAGGATCTAATGAATTTGTTCTAATGGATGTAATTGGCCATGTTGTACAACGATATGACCTCAAGGAATCTGAAAAAGGTGGGAAAATAAATAAGCATATGGAGATCGTACTTGAAGATTTAGAGCACAATAAACTTATGTGCACTTTGTGGGATGATTTTGCTACTACAATGGACCAGTTCCTTACAAATATGTCAAGTAACATTGTTGTTATTGTCATTTTGCAACTGTGCAAGCGCAATGTGTTCAATGTTTGCAGGAAAAATGGGCATCTCTAA 537 0.3687 MLLVDEEEVRIHAYVKKALITTFEGTLKEGIAYVMENLLVAENKMKFKTTSHAYKFGFMQSTRVTEIEADNIPSHSFLFVPFLDILAGSNEFVLMDVIGHVVQRYDLKESEKGGKINKHMEIVLEDLEHNKLMCTLWDDFATTMDQFLTNMSSNIVVIVILQLCKRNVFNVCRKNGHL. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02853 178 CDD RPA1_DBD_A_like 1 64 - -
Seca6g02853 178 Pfam Domain of unknown function DUF223 2 86 IPR003871 -
Seca6g02853 178 Gene3D - 1 69 IPR012340 -
Seca6g02853 178 Gene3D - 70 175 IPR012340 -
Seca6g02853 178 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
Seca6g02853 178 SUPERFAMILY Nucleic acid-binding proteins 79 159 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02853 Seca-Chr6 93816455 93817644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02853 3 163 Core DNA Replication Machinery Family AT5G08020 30.539 8.67e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02853 - - tpra:123896123 163.31