Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02848 ATGCCGTCAACCCTCAGCCTCGCCGCTCTTCCCGTCGGCCAGACACTCCGCTTCTCTGAAGACTGCTTTTCCTCCGCCAGGTTTCTCCGGCAGCCGACTTCTGAGTGTGCTAACCACCGCCGGACCTCGATCCGCGCCGTTGCGGCGGAGGTGATCGAGATGCGGCGGCCGGCGTCGAGCCTCTACGAGGTGCTGCGAGTGGAGAAAAACGCATCGCCGAGGGAGATCAAGTCTGCTTACCGGAGCCTTGCGAAGCTCTACCATCCCGACGCGGTGGTGCGTCGTTCGCCGGAGTATGACGGTGGAGACTTCATCCAGATCCGAAACGCATACGAGACGCTGTCGGATCCATCAGCGAGGGCGATGTACGACCTGTCGCTGGCGGCGGCGCACGGCGGAAGGCACCGCCGGTTTCCTTCTCCACTGAGCAAGAATCGTTATTCTGGGTTTTACTCGAGCCGGAGATGGGAAACAGACCAATGCTGGTAG 489 0.6155 MPSTLSLAALPVGQTLRFSEDCFSSARFLRQPTSECANHRRTSIRAVAAEVIEMRRPASSLYEVLRVEKNASPREIKSAYRSLAKLYHPDAVVRRSPEYDGGDFIQIRNAYETLSDPSARAMYDLSLAAAHGGRHRRFPSPLSKNRYSGFYSSRRWETDQCW. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02848 162 SMART dnaj_3 59 119 IPR001623 -
Seca6g02848 162 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Seca6g02848 162 SUPERFAMILY Chaperone J-domain 58 136 IPR036869 -
Seca6g02848 162 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Seca6g02848 162 CDD DnaJ 62 116 IPR001623 -
Seca6g02848 162 PRINTS DnaJ domain signature 99 119 IPR001623 -
Seca6g02848 162 PRINTS DnaJ domain signature 62 80 IPR001623 -
Seca6g02848 162 PRINTS DnaJ domain signature 80 95 IPR001623 -
Seca6g02848 162 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 9 162 - -
Seca6g02848 162 Gene3D DnaJ domain 47 145 IPR036869 -
Seca6g02848 162 Pfam DnaJ domain 61 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02848 Seca-Chr6 93771323 93771811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02848 62 124 C2H2 Transcription Factor Family AT1G74250 45.455 1.55e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02848 - - tpra:123912861 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02848 6 93771323 93771811 Seca6g02848 6 93771323 93771811 ECH
Seca6g02848 6 93771323 93771811 Seca6g02848 6 93771323 93771811 PCT