Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02842 ATGTTGTGCAAAGAGTTTGGTAGTGAAGAAAAGGCATATGATTTCTATAAGTTGTATGCAAAATATTATGGGTTTGTGGTTAGGAAAGATGATGTAACCAAGGATATTGGGGGTAATATTATAATGCGGCAATTTGTTTGTAATAGGGAGGGTTTAAGGAACAAGAAGCGTTTTATGAGGGTGGATCAGAAGAGAGAACATAGGTCGTTGACTTGTACACGGTGTAATGCTCAGCTTCGCATACATTATTATCATAAGAGTCAAATTTGGAAAGTAGTGTCATTTGAGCAGTGCCATAACCATGAACTTACCCCATCAAGATATGTGCACCTACACACTACTTACCGTAATTTGTGA 357 0.3754 MLCKEFGSEEKAYDFYKLYAKYYGFVVRKDDVTKDIGGNIIMRQFVCNREGLRNKKRFMRVDQKREHRSLTCTRCNAQLRIHYYHKSQIWKVVSFEQCHNHELTPSRYVHLHTTYRNL. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02842 118 Pfam FAR1 DNA-binding domain 14 105 IPR004330 -
Seca6g02842 118 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02842 Seca-Chr6 93669697 93670053 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g02842 FAR1 2.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02842 - - ccaj:109792835 164.851