Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02835 ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCCTACATTGCTCAACATGGCACTCGCAATTGGCGTCTCATTCCCAAGAATGCTGGTCTCCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAACATGGTCAATTCTCAGATTCAGAAGAACAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCCGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGAATGGGTATTGACCCTGTCACTCACAAGCCATTCTCCCATCTAATGGCTGAAATTGCTACAACATTGGCACCCCCACAAGCAGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCAGGGCCAACATTCCACTGCTGCACTGGGAAATAACATCACTGATTACATTAACTGTAAGCCAGAAGAAAAGGATGACACTGTCGAGAAGATTAAGCTTGACCTATCAAAGGCCATACAAGAACCTGAAATGATACCCTCAAACAAACCTTGGGACACCACTACAGCTGCATCTGCAAGTTTTGCAATGCCATACAGTGTTTTCCCTACAATGTCTGGGTTTCAATTCAGTCCAGCATCTTTCGGAAATAACGGGAATGCATCACCATGGAGCCAAAGTGGATGTACTGGAAGCACATGTACAGCCATGGATCAGCAAAGTCAGTTACATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTCGTGTGGGATTTACCAGCAGATGATTTAATTAACCCCATGGTATAA 975 0.4462 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFQGQHSTAALGNNITDYINCKPEEKDDTVEKIKLDLSKAIQEPEMIPSNKPWDTTTAASASFAMPYSVFPTMSGFQFSPASFGNNGNASPWSQSGCTGSTCTAMDQQSQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLINPMV. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02835 324 FunFam transcription factor MYB80 69 129 - -
Seca6g02835 324 FunFam Transcription factor RAX3 7 67 - -
Seca6g02835 324 SMART sant 13 63 IPR001005 -
Seca6g02835 324 SMART sant 66 114 IPR001005 -
Seca6g02835 324 Gene3D - 69 128 - -
Seca6g02835 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca6g02835 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca6g02835 324 CDD SANT 70 112 IPR001005 -
Seca6g02835 324 CDD SANT 17 61 IPR001005 -
Seca6g02835 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca6g02835 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca6g02835 324 PANTHER F14D16.11-RELATED 1 322 - -
Seca6g02835 324 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Seca6g02835 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca6g02835 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca6g02835 324 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02835 Seca-Chr6 93558132 93559654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02835 1 324 MYB Transcription Factor Family AT5G56110 57.567 5.82e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g02835 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02835 K09422 - gmx:100800764 606.675