Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02825 ATGGATGGGACTCCTAGTATTCTCCAAATTCTTTTGATGCAGGCATGCGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTACGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATTCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAGTCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGAGGCACTGGGGGACGTTTTGCAAAGAAAAATGAAGGTGAGGCCTCAAACAACTCAGGCAAAGAAAAGGATAATGGTTCAGGTCCTGTTCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGGATCAAAAGTAGGCAACAAATTTGAGGCACCCAATTATGCAAATGGCAGTGGCTCCTACCATAATAATAATAATAATGGTTTGCAATCTTCAAGGTATCATCAGCACTCAGGTGAAAGAGTGGAAGAAGGGGACTGCTCAGGCCAGCAAAGGGGAAGCATCTCTTCAAATGAGGCATCACAGAGGCGCCTTGCTATTCAGTAG 714 0.444 MDGTPSILQILLMQACATNPYQDPYYGGMMAAYGHQQLGYAPFIGIPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKNEGEASNNSGKEKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMQQDARGSKVGNKFEAPNYANGSGSYHNNNNNGLQSSRYHQHSGERVEEGDCSGQQRGSISSNEASQRRLAIQ. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02825 237 Gene3D - 58 120 - -
Seca6g02825 237 SMART cbf3 57 118 IPR001289 GO:0003700|GO:0006355
Seca6g02825 237 MobiDBLite consensus disorder prediction 218 237 - -
Seca6g02825 237 MobiDBLite consensus disorder prediction 93 112 - -
Seca6g02825 237 PRINTS CCAAT-binding transcription factor subunit B signature 92 115 IPR001289 GO:0003700|GO:0006355
Seca6g02825 237 PRINTS CCAAT-binding transcription factor subunit B signature 61 83 IPR001289 GO:0003700|GO:0006355
Seca6g02825 237 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 172 IPR001289 GO:0003700|GO:0006355
Seca6g02825 237 MobiDBLite consensus disorder prediction 128 171 - -
Seca6g02825 237 ProSiteProfiles NF-YA/HAP2 family profile. 58 118 IPR001289 GO:0003700|GO:0006355
Seca6g02825 237 MobiDBLite consensus disorder prediction 182 204 - -
Seca6g02825 237 MobiDBLite consensus disorder prediction 91 237 - -
Seca6g02825 237 ProSitePatterns NF-YA/HAP2 subunit signature. 63 83 IPR018362 GO:0003677|GO:0016602
Seca6g02825 237 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 60 115 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02825 Seca-Chr6 93484235 93489625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02825 16 237 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.207 7.73e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca6g02825 CBFB_NFYA 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02825 K08064 - gmx:100808378 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02825 6 93484235 93489625 Seca6g02825 6 93484235 93489625 ECH
Seca6g02825 6 93484235 93489625 Seca6g02825 6 93484235 93489625 PCT