Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02810 ATGTCTAAGAACAAACAGGAAGTCAAGCACTGCAAGGGACATCTTCTGCGAAAATTCATAAAAGAATGCTGGTCAAAATGTGGATGTAATAAAAACTGTGGCAACTGTATTGTTCAGCAAGGCATCACTACAGATCTTCAGGTGTTTCGTACACCAGAGGGGAAGGGTTGGGGAATCCGAACACTTAAAGATTTGCCAAAGGGTGCCTTTGTTTGTGAGTTTGCTGGGGAAGTAGTAACCAACTTAGAACTACGTAAGCGAATTGTGCAAAGCATTGGTGAAGAGAAGCACACATATACAGTACTTCTTGATGCAGATTGGTGTTCAGAGAATATCCTGAAGGATGAAGAGACCCTCTGTTTAGATGCAACATTATATGGAAATGTTTCTCGATTTATCAATCACAGATGGACTGATGCAAGCTTACTTGAGATCCCAGTTGAAGTGGAGACACCAGATCATCACTATTATCACCTTGCTTTTTTCACAACAAGGAAAGTTTCTGCCATGGAAGAACTGACTTGGGACTATGGCATTGACTTCAATGACCAAGATCATCCTGTGAAGGCTTTCAGATGCCTTTGTAACAGTCCATTGTGCCGTGACCAGAGACAGAAAAATGATTGCACAAAGATACAGTTGTTCTCTGCAAACTTATTAGAACTGAATACCAGGTGA 678 0.4115 MSKNKQEVKHCKGHLLRKFIKECWSKCGCNKNCGNCIVQQGITTDLQVFRTPEGKGWGIRTLKDLPKGAFVCEFAGEVVTNLELRKRIVQSIGEEKHTYTVLLDADWCSENILKDEETLCLDATLYGNVSRFINHRWTDASLLEIPVEVETPDHHYYHLAFFTTRKVSAMEELTWDYGIDFNDQDHPVKAFRCLCNSPLCRDQRQKNDCTKIQLFSANLLELNTR. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02810 225 CDD SET_SETDB-like 12 178 - -
Seca6g02810 225 Gene3D SET domain 1 203 IPR046341 -
Seca6g02810 225 Pfam SET domain 56 178 IPR001214 GO:0005515
Seca6g02810 225 SUPERFAMILY SET domain 7 201 IPR046341 -
Seca6g02810 225 ProSiteProfiles SET domain profile. 44 178 IPR001214 GO:0005515
Seca6g02810 225 SMART set_7 44 184 IPR001214 GO:0005515
Seca6g02810 225 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 2 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02810 Seca-Chr6 93335902 93337779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02810 20 201 C2H2 Transcription Factor Family AT2G23740 36.898 2.55e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g02810 SET 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02810 - - qsu:111999549 324.709