Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02799 CAGAAACTTCTCCCCATAGAAATCACAGCCACACACTTCCCCGTCTATATAAACCTCTTCGGCTTCGGTGCACTTCTTTTCTTCCCAAACGCAATCATCTGCGTGCCGTTCCCTGAGAGCGCTGGTGCTGAATTTCAATCTTCGAATAGAGCAAGTCTTCGTCGTTTATCTATTGATATGATGTCGTATTCAAGAAGGTCAAGGTATTCTCCTTCTCCTTCTCCATACAGGCGATACAGTAGGTCTGTGTCCAGGTCTCTTTCTAGGTCGAGATCGAGAAGCCGTTCAAGATTTAGGAGCACATCACAAGATGCTGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGAATCACCAAGAGAGAACTGGAGAAACATTTTGCTGCTGAGGGAAAAGTTATAGATGTTCATCTGGTAGTTGATCCCTGGACAAGGGAATCCCGTGGGTTTGGGTTTGTAACAATGGAGACTGTTGAAGAAGCTGATCGATGCGTGAAGTATCTAAATCGCTCTGTACTTGAAGGGCGTGTGATCACGGTGGAGAAGTTTCTGTGGCAGCAGGTTAGCTGTGTGAAGCAGCTCTTCGTCAAACTCTCAAATCCCAACTAA 618 0.4547 QKLLPIEITATHFPVYINLFGFGALLFFPNAIICVPFPESAGAEFQSSNRASLRRLSIDMMSYSRRSRYSPSPSPYRRYSRSVSRSLSRSRSRSRSRFRSTSQDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKFLWQQVSCVKQLFVKLSNPN. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02799 205 MobiDBLite consensus disorder prediction 65 112 - -
Seca6g02799 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Seca6g02799 205 SUPERFAMILY RNA-binding domain, RBD 68 185 IPR035979 GO:0003676
Seca6g02799 205 Gene3D - 57 187 IPR012677 -
Seca6g02799 205 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 106 185 - -
Seca6g02799 205 SMART rrm1_1 111 184 IPR000504 GO:0003723
Seca6g02799 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 184 IPR000504 GO:0003723
Seca6g02799 205 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02799 Seca-Chr6 93152558 93154456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02799 111 183 Eukaryotic Initiation Factors Gene Family AT1G49760 36.986 1.75e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02799 - - aip:107613061 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02799 6 93152558 93154456 Seca6g02799 6 93152558 93154456 ECH