Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02795 ATGAAGAAAACACCAGACCCCAGTTTGCATCAGTCTAACCAAAGAAAAAAGAACTCTAGTCTCCAAGATAGTGGTGCTGGTGCAGGTAAAGGAAATGGCACACAGAAGCAGAATCATATGAATCAAAGTTCCATGACATATTTCAAGAAGATATTTGCAAGCCTTTTTACTTTGTTTCTCCCTGGGAAAGGAAAAACAGTCTCAGAAGCTGCTCAAGTTGATGACAGAAAGAATGCACACAAAGTCAGAGGTGTATCATCTTCAACAGATATATCATCTGATAGTTCTAAGAGTTCATCAAAAGGGAAGTTTTCTCAATCCTCCACAACATCTAGCACATCAAATACTAAGCTTGGAACAGGAAACTTTTCCTTTGAGGAAATTTACAAGGCAACGGCAAAATTCTCTCCAGATAATAAGATTGGGGAAGGTGGGTTTGGAACAGTATATAAGGGAAAACTAAATGATGGAACCCTTGTGGCTGTAAAACGTGCCAAGAAGGATCAAGATGTACAAAACAAGCAGTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCATCGGAATCTTGTGAGGTGGTATGGATATTTGGAGCATGGTGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGAACTCTTCGGGAACATCTAGATGGTATGCGGGGAAATGGACTAGAACTTGGTGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCTGTTACATACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATCTTAATCGCTGACAATCTAAAGGCCAAAGTGGCAGACTTTGGTTTTGCCCGGTTGGCTGCAGAAGACCCATCTGCAACTCATGTTTCAACAAATATTAAAGGAACAGCTGGTTACTTGGATCCTGATTACATGAGAACACACCATCTCTCTGAAAAGAGTGATGTTTATTCCTTTGGTGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCTCTCAGTGAGAGAGTTACAATTAAGTGGGCAATGCAGATGTTGAAACAAGGAGAATTTGTGATTGCCATGGATCCAAGGCTTCGGAGAAGTCCAGCCTCAAACAAGGCAGTACAGAAGGTTCTCAAGCTTGCTTTCCAATGCCTTGCACCTGTGAGAAGATCACGGCCAACCATGAAGAGCTGTGCAGAGGTTCTATGGAGCATCCGAAAAGATTTTAGAGATAAAGTCCATTCTCGTCCTCCACTTGGTTCTCCCCATTCTGCAGATTTTCCTCAAAGGGATACTAGTTCTAGAAAGAATAGGCATAAGTCATATGGTATTGAAAATGACAGCCGCTACAAATTTGTCTCTGCATAA 1392 0.403 MKKTPDPSLHQSNQRKKNSSLQDSGAGAGKGNGTQKQNHMNQSSMTYFKKIFASLFTLFLPGKGKTVSEAAQVDDRKNAHKVRGVSSSTDISSDSSKSSSKGKFSQSSTTSSTSNTKLGTGNFSFEEIYKATAKFSPDNKIGEGGFGTVYKGKLNDGTLVAVKRAKKDQDVQNKQLAEFKNEINTLSKIEHRNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGMRGNGLELGERLDIAIDVAHAVTYLHMYTDHPIIHRDIKASNILIADNLKAKVADFGFARLAAEDPSATHVSTNIKGTAGYLDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHPVEPKRPLSERVTIKWAMQMLKQGEFVIAMDPRLRRSPASNKAVQKVLKLAFQCLAPVRRSRPTMKSCAEVLWSIRKDFRDKVHSRPPLGSPHSADFPQRDTSSRKNRHKSYGIENDSRYKFVSA. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02795 463 Pfam Protein kinase domain 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02795 463 MobiDBLite consensus disorder prediction 421 455 - -
Seca6g02795 463 MobiDBLite consensus disorder prediction 84 116 - -
Seca6g02795 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 214 424 - -
Seca6g02795 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca6g02795 463 SUPERFAMILY Protein kinase-like (PK-like) 109 413 IPR011009 -
Seca6g02795 463 MobiDBLite consensus disorder prediction 69 83 - -
Seca6g02795 463 MobiDBLite consensus disorder prediction 437 454 - -
Seca6g02795 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 99 213 - -
Seca6g02795 463 Coils Coil 162 182 - -
Seca6g02795 463 MobiDBLite consensus disorder prediction 1 39 - -
Seca6g02795 463 MobiDBLite consensus disorder prediction 67 116 - -
Seca6g02795 463 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Seca6g02795 463 MobiDBLite consensus disorder prediction 11 39 - -
Seca6g02795 463 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02795 463 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02795 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 426 - -
Seca6g02795 463 Gene3D Phosphorylase Kinase; domain 1 93 213 - -
Seca6g02795 463 Gene3D Transferase(Phosphotransferase) domain 1 214 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02795 Seca-Chr6 93105559 93109661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02795 84 456 Trihelix Transcription Factor Family AT1G70460 37.995 3.39e-71 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca6g02795 Pkinase 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02795 - - gmx:100819818 677.167