Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02791 | ATGGGAAAAGAAGAAGGTGATCGGGAATGCAAAAACGAGAACAAGCCTCCACTGTCATGGTTACCATCACCAAATACGACGGAGAGAAAATCTAGCCCTGATGAAAAGAAAAATCAAGCATCCAGTGAGAGTTCTCCATCACTCTCTGATATTCACAAGCACATGCAGAAAAAGATAGACAGCTTAAGCTCGGTTGGTCAATCCTCAAAGTGCTTTTGCGGCATATGCTTTGATTTCAAAACAGAAGCTGATATGTTCAGAAGAAGTAAGTGCAACCACTCATTCTGTGCTGATTGCATATCCAAGCATGTGGCTACTCAAATACAACAAAATATTCTCAAGGTGAATTGTCCACATCCAAATTGTTCTATACAATTGAAGCCGGAATATTTGCAAGCCATTTTGCCTAAACAAGTTATTGATCGATGGGAATGTGCAAGAGTTGAGTCTTCTATTGATTCCAGCCAAAAGATTTACTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGGCAGAAGTTGTCACCAGTTCTGAGTGTCCCTCCTGTCACAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGAATGAATTGCAAGGAATTCAAAAAAAGTAAAAGTGAAAAGAAGTTGGAGAGTGAGTTTATGAAGTTGGCCAAAAGTAACATGTGGCAGAAATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTAGTGGATGTGAACACATGACCTGCAGATGTGGATGCCACTTCTGCTACAACTGTGGGAAGGATTGGAAGTATGAACATACATGCAAGAAACCTTAG | 819 | 0.409 | MGKEEGDRECKNENKPPLSWLPSPNTTERKSSPDEKKNQASSESSPSLSDIHKHMQKKIDSLSSVGQSSKCFCGICFDFKTEADMFRRSKCNHSFCADCISKHVATQIQQNILKVNCPHPNCSIQLKPEYLQAILPKQVIDRWECARVESSIDSSQKIYCPFKNCSVLLVNDGAEVVTSSECPSCHRLFCAQCKVPWHAGMNCKEFKKSKSEKKLESEFMKLAKSNMWQKCPKCSIYVQRSSGCEHMTCRCGCHFCYNCGKDWKYEHTCKKP. | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02791 | 272 | SUPERFAMILY | RING/U-box | 69 | 152 | - | - | |
| Seca6g02791 | 272 | FunFam | RBR-type E3 ubiquitin transferase | 68 | 154 | - | - | |
| Seca6g02791 | 272 | SUPERFAMILY | RING/U-box | 219 | 269 | - | - | |
| Seca6g02791 | 272 | ProSiteProfiles | Zinc finger RING-type profile. | 73 | 118 | IPR001841 | - | |
| Seca6g02791 | 272 | Pfam | IBR domain, a half RING-finger domain | 221 | 269 | IPR002867 | GO:0008270 | |
| Seca6g02791 | 272 | Pfam | IBR domain, a half RING-finger domain | 142 | 203 | IPR002867 | GO:0008270 | |
| Seca6g02791 | 272 | CDD | BRcat_RBR_unk | 154 | 203 | - | - | |
| Seca6g02791 | 272 | ProSitePatterns | Zinc finger RING-type signature. | 91 | 100 | IPR017907 | - | |
| Seca6g02791 | 272 | ProSiteProfiles | TRIAD supradomain profile. | 69 | 272 | IPR044066 | - | |
| Seca6g02791 | 272 | SUPERFAMILY | RING/U-box | 155 | 209 | - | - | |
| Seca6g02791 | 272 | CDD | Rcat_RBR_unk | 227 | 263 | - | - | |
| Seca6g02791 | 272 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 154 | IPR013083 | - | |
| Seca6g02791 | 272 | Pfam | Zinc finger, C3HC4 type (RING finger) | 73 | 118 | IPR018957 | GO:0046872 | |
| Seca6g02791 | 272 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 34 | 263 | IPR031127 | GO:0004842|GO:0016567 | |
| Seca6g02791 | 272 | Gene3D | - | 200 | 271 | - | - | |
| Seca6g02791 | 272 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Seca6g02791 | 272 | SMART | ibrneu5 | 209 | 269 | IPR002867 | GO:0008270 | |
| Seca6g02791 | 272 | SMART | ibrneu5 | 141 | 203 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02791 | Seca-Chr6 | 93034327 | 93036039 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02791 | 73 | 260 | C3H Transcription Factor Family | AT2G19610 | 32.673 | 9.00e-27 | 105 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02791 | K11975 | - | lang:109340029 | 317.005 |