Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02790 | ATGAAGACTGAAATCCATCTTCCTCAAACAATTTCCACATCAGAGACAAAATCTCCCTCTGATCAAAACAAGAATAAATCATCAATATCAAGTGACGGTTCTGATTCTCACAACAACCACAAGATAGAGGGAAGACGATTCGTCATTCAGTCTCAATGCCATGTTCCTCGAAGACCTCGCTCTTCCCATGCTTCAATTCACCGTTGGATACCACTACCACAGAGAAAATCTGCCTCTCATGAAAAGAACAACGAAGCAGCCAGTGAGATACAGAACAAGACAGAGGCAAGAAGCTACATCTTAAAGACTCAAAACCATGTTCCTCTTAGAGTTTTCACTTCCACTGTACCAATTATAATTACTACACCAGCAGTAAATAAATCTCTCTCTGATGAAAAGAAGAAGAAGAAGGAAATTACTGAGAGTTCTCGTTCTCGATCATTCCTTGATACTCACAATCACAAGCACATCCAGAAAAAGATAGATAGCTTAAGCTCGGTTGGTCAATCCTCAAAATGCTTTTGCAACATATGCTTTGATTTCAAAACAGAAGCTGATATGTTCAGAAGAAGTAAGTGCAACCACTCATTCTGTGCTGATTGCATATCCAAGCATGTGGCTACTCAAATTCAACAAAATATTCTCAAGGTGAATTGTCCACATCCAAATTGTTCTATAAAATTGAAGCCAGAATATTTGCAAGGCATTTTGCCTATACAAGTTATTGATCGATGGGAATGTGCAAGAGTTGAGTCTTCTATTGCTTCCAGGCAAAAGATTTACTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGGCAGAAGTTGTCACCAGTTCTGAGTGTCCCTCCTGTCACAGGCTATTCTGTGCACAATGTAAGGTCCCATGGCATGCAGGAATGAATTGCAAGGAATTCAAAAGGAGTAAAAGTGAAAAGAAGTTGGACAGTAAGTTTCTGGAGTTGGCCAAAAGTGAAATGTGGCAGAAATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTAGTGGATGTGAACACATGAACTGCAGGTTATATCATTGA | 1068 | 0.3942 | MKTEIHLPQTISTSETKSPSDQNKNKSSISSDGSDSHNNHKIEGRRFVIQSQCHVPRRPRSSHASIHRWIPLPQRKSASHEKNNEAASEIQNKTEARSYILKTQNHVPLRVFTSTVPIIITTPAVNKSLSDEKKKKKEITESSRSRSFLDTHNHKHIQKKIDSLSSVGQSSKCFCNICFDFKTEADMFRRSKCNHSFCADCISKHVATQIQQNILKVNCPHPNCSIKLKPEYLQGILPIQVIDRWECARVESSIASRQKIYCPFKNCSVLLVNDGAEVVTSSECPSCHRLFCAQCKVPWHAGMNCKEFKRSKSEKKLDSKFLELAKSEMWQKCPKCSIYVQRSSGCEHMNCRLYH. | 356 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02790 | 355 | Gene3D | - | 302 | 353 | - | - | |
| Seca6g02790 | 355 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
| Seca6g02790 | 355 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 74 | 351 | IPR031127 | GO:0004842|GO:0016567 | |
| Seca6g02790 | 355 | Pfam | Zinc finger, C3HC4 type (RING finger) | 175 | 220 | IPR018957 | GO:0046872 | |
| Seca6g02790 | 355 | ProSitePatterns | Zinc finger RING-type signature. | 193 | 202 | IPR017907 | - | |
| Seca6g02790 | 355 | SUPERFAMILY | RING/U-box | 257 | 311 | - | - | |
| Seca6g02790 | 355 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
| Seca6g02790 | 355 | SUPERFAMILY | RING/U-box | 171 | 252 | - | - | |
| Seca6g02790 | 355 | MobiDBLite | consensus disorder prediction | 74 | 88 | - | - | |
| Seca6g02790 | 355 | FunFam | RBR-type E3 ubiquitin transferase | 170 | 256 | - | - | |
| Seca6g02790 | 355 | MobiDBLite | consensus disorder prediction | 128 | 147 | - | - | |
| Seca6g02790 | 355 | Pfam | IBR domain, a half RING-finger domain | 245 | 305 | IPR002867 | GO:0008270 | |
| Seca6g02790 | 355 | CDD | BRcat_RBR_unk | 258 | 308 | - | - | |
| Seca6g02790 | 355 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 256 | IPR013083 | - | |
| Seca6g02790 | 355 | SUPERFAMILY | RING/U-box | 320 | 351 | - | - | |
| Seca6g02790 | 355 | ProSiteProfiles | Zinc finger RING-type profile. | 175 | 220 | IPR001841 | - | |
| Seca6g02790 | 355 | ProSiteProfiles | TRIAD supradomain profile. | 171 | 355 | IPR044066 | - | |
| Seca6g02790 | 355 | SMART | ibrneu5 | 243 | 305 | IPR002867 | GO:0008270 | |
| Seca6g02790 | 355 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02790 | Seca-Chr6 | 93013318 | 93014385 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02790 | 175 | 352 | C3H Transcription Factor Family | AT2G19610 | 31.414 | 8.13e-25 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02790 | K11975 | - | lang:109340029 | 278.87 |