Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02789 | ATGACGGAGCGAAACCGCTTCATCATAAAGACTGAAATCCATCTTCCTCAAACAATTTCCACATCAGAGGGAGAATCTCCCTCTAATCAAAAGAAGAATAAAGCATCCAGTACTGACAATTCTGATTCTCACAACATAGAGGGAAGACGATACATCTTTCAGACTCAATGGCATGTTCCTCGAAGACCTCGCACTCCCTATGTTCCTCGAAGAGCTTATGACAGTGATGAACCAAAGACTACTAAAGCAGTCAGGGAGTGTTGTGGATCATTCTGTTATTACACTCACAATCATATACAGAACAAGACAAAAGTAAAAAGCTCCACCATAAACTCCATTGGTCAATCCTCAAAATGCTTTTGCACCATATGCTTTGATTTCAAAACAGAAGGTGAAATATTCAGAACAAGTGGTGAGTGCAACCACTCCTTTTGCGCTGAATGCATATCCATGTATGTGGCTACTCAAATACAACAAAATATTCTCAAGGTGGATTGTCTTGATCCTAATTGTTTTGTGGAATTGGAGCCCCAATATTTGCAACCAATTTTGCCTAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTTAGAGCAAAAGACTTACTGCCCTTTTAAGGATTGCTTTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTCTGAGTATCCCTATTGTCATAGGCTATTCTGTGCACAGTGTAAGGTCCTATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGGAAAGGATTAATTGTGAAAAGGAGTTGGAGAGTATGTTTCTAGAGTTGGCCAAAAGTGAAATGTGGCAGATATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTAGTGGATGTGAACACAGGAAATGCAAGTGTGGATACAACTTCTGCTACATCTGTGGGAAGGTTTGGGAGTATGGACATACATGCAATAAATCTTAG | 975 | 0.4021 | MTERNRFIIKTEIHLPQTISTSEGESPSNQKKNKASSTDNSDSHNIEGRRYIFQTQWHVPRRPRTPYVPRRAYDSDEPKTTKAVRECCGSFCYYTHNHIQNKTKVKSSTINSIGQSSKCFCTICFDFKTEGEIFRTSGECNHSFCAECISMYVATQIQQNILKVDCLDPNCFVELEPQYLQPILPREVVDRWEAARFESSIALEQKTYCPFKDCFVLLVNDEGEVVTSSEYPYCHRLFCAQCKVLWHAGMDCEEFQELERINCEKELESMFLELAKSEMWQICPKCSIYVQRSSGCEHRKCKCGYNFCYICGKVWEYGHTCNKS. | 325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02789 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 205 | IPR013083 | - | |
| Seca6g02789 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 166 | IPR001841 | - | |
| Seca6g02789 | 324 | SUPERFAMILY | RING/U-box | 269 | 322 | - | - | |
| Seca6g02789 | 324 | FunFam | RBR-type E3 ubiquitin transferase | 116 | 203 | - | - | |
| Seca6g02789 | 324 | Pfam | IBR domain, a half RING-finger domain | 191 | 252 | IPR002867 | GO:0008270 | |
| Seca6g02789 | 324 | Pfam | IBR domain, a half RING-finger domain | 274 | 321 | IPR002867 | GO:0008270 | |
| Seca6g02789 | 324 | Gene3D | - | 249 | 324 | - | - | |
| Seca6g02789 | 324 | SUPERFAMILY | RING/U-box | 117 | 199 | - | - | |
| Seca6g02789 | 324 | MobiDBLite | consensus disorder prediction | 14 | 45 | - | - | |
| Seca6g02789 | 324 | SMART | ibrneu5 | 190 | 252 | IPR002867 | GO:0008270 | |
| Seca6g02789 | 324 | SMART | ibrneu5 | 265 | 321 | IPR002867 | GO:0008270 | |
| Seca6g02789 | 324 | ProSitePatterns | Zinc finger RING-type signature. | 140 | 149 | IPR017907 | - | |
| Seca6g02789 | 324 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 40 | 315 | IPR031127 | GO:0004842|GO:0016567 | |
| Seca6g02789 | 324 | CDD | Rcat_RBR_unk | 279 | 315 | - | - | |
| Seca6g02789 | 324 | CDD | BRcat_RBR_unk | 205 | 255 | - | - | |
| Seca6g02789 | 324 | SUPERFAMILY | RING/U-box | 205 | 258 | - | - | |
| Seca6g02789 | 324 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Seca6g02789 | 324 | ProSiteProfiles | TRIAD supradomain profile. | 117 | 324 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02789 | Seca-Chr6 | 92958387 | 92959443 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02789 | 105 | 322 | C3H Transcription Factor Family | AT2G31760 | 28.761 | 1.03e-16 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02789 | K11975 | - | lang:109340029 | 281.952 |