Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02787 | ATGTTCGGAACAAGTGGTGAGTGCAACCACTCCTTTTGCGCTGAATGCATATCCATGCACATGGCTACTCAAATACAACAAAATATTCTCAATGTGAATTGTCCTGATCCTAATTGTTGTGTGGAATTGGAGCCCCAATATTTGCAACCAATTTTGCCTAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTCAAAGCAAAAAACTTACTGCCCTTTTAAGGATTGCTCTGTTTTGTTAGTGAATGATGAGGGAGAAGGCTTTTGCACCATATGCTTTGATTTCAAAACAGAAGCTGAAATGTTCGGAACAAGTGAGTGCAACCACTCCTTTTGCGCTGAATGCATATCCATGCATGTGGCTACTCAAATACAACAAAATATTCTCAATGTTAATTGTCCTGATCCTAATTGTTGTGTGGAATTGGAGCCCCAATATTTGCAACTAATTTTGCCCAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTTAAAGCAAAAGACTTACTGCCCTTTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTCTGAGTGTCCCTATTGTCATAGGCTATTCTGTGCACAATGTAAGGTCCCATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGGAAAGGAGTAATGGTGAAAAGGAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAACTAAAATGTGGCAGATATGTCCTAAATGCTCTATTTATGTCCAAAGAAGTAGTGGATGTGAACACATGAAATGCAGGTTATATCACTGA | 837 | 0.4014 | MFGTSGECNHSFCAECISMHMATQIQQNILNVNCPDPNCCVELEPQYLQPILPREVVDRWEAARFESSIASKQKTYCPFKDCSVLLVNDEGEGFCTICFDFKTEAEMFGTSECNHSFCAECISMHVATQIQQNILNVNCPDPNCCVELEPQYLQLILPREVVDRWEAARFESSIALKQKTYCPFKDCSVLLVNDEGEVVTSSECPYCHRLFCAQCKVPWHAGMDCEEFQELERSNGEKELESKFLELAKTKMWQICPKCSIYVQRSSGCEHMKCRLYH. | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02787 | 278 | CDD | BRcat_RBR_unk | 177 | 228 | - | - | |
| Seca6g02787 | 278 | FunFam | RBR-type E3 ubiquitin transferase | 90 | 176 | - | - | |
| Seca6g02787 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 178 | IPR013083 | - | |
| Seca6g02787 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 72 | IPR013083 | - | |
| Seca6g02787 | 278 | ProSiteProfiles | TRIAD supradomain profile. | 91 | 278 | IPR044066 | - | |
| Seca6g02787 | 278 | ProSitePatterns | Zinc finger RING-type signature. | 113 | 122 | IPR017907 | - | |
| Seca6g02787 | 278 | SUPERFAMILY | RING/U-box | 6 | 67 | - | - | |
| Seca6g02787 | 278 | SUPERFAMILY | RING/U-box | 243 | 274 | - | - | |
| Seca6g02787 | 278 | SUPERFAMILY | RING/U-box | 89 | 172 | - | - | |
| Seca6g02787 | 278 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 8 | 83 | IPR031127 | GO:0004842|GO:0016567 | |
| Seca6g02787 | 278 | ProSitePatterns | Zinc finger RING-type signature. | 8 | 17 | IPR017907 | - | |
| Seca6g02787 | 278 | Pfam | IBR domain, a half RING-finger domain | 164 | 225 | IPR002867 | GO:0008270 | |
| Seca6g02787 | 278 | SUPERFAMILY | RING/U-box | 177 | 230 | - | - | |
| Seca6g02787 | 278 | SMART | ibrneu5 | 58 | 139 | IPR002867 | GO:0008270 | |
| Seca6g02787 | 278 | SMART | ibrneu5 | 163 | 225 | IPR002867 | GO:0008270 | |
| Seca6g02787 | 278 | Pfam | RING-type zinc-finger | 95 | 132 | IPR027370 | - | |
| Seca6g02787 | 278 | Gene3D | - | 222 | 276 | - | - | |
| Seca6g02787 | 278 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 140 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02787 | Seca-Chr6 | 92909719 | 92922820 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02787 | 95 | 275 | C3H Transcription Factor Family | AT2G19610 | 26.804 | 3.96e-17 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02787 | K11975 | - | lang:109340029 | 283.493 |