Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02786 ATGCATGTGGCTACTCAAATACAACAAAATATTCTCAATGTTAATTGTCCTGATCCTAATTGTTGTGTGGAATTGGAGCCCCAATATTTGCAACCAATTTTTCCCAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTCAAAGCAAAAGACTTACTGCCCATTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTCTGAGTGTCCCTATTGTCATAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGGAAAGGAGTAATGGTGAAAAGGAGTTGGAGAAAAATCATTTGCAGAACAAGACAAAGGTAAAAAGCTCCACCATAAACTCCGTTGGTCAATCCTCAAAATGCTTTTGCACCATATGCTTTGATTTCAAAACAGAAGCTGAAATGTTCGGAACAAGTGGTGAGTGCAACCACTCCTTTTGCGCTGAATGCATATCCATGCATGTGGCTACTCAAATACAACAAAATATTCTCAACGTGAATTGTCCTGATCCTAATTGTTGTGTGGAATTGGAGCCCCAATATTTGCAACCAATTTTGCCTAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTCAAAGCAAAAGACTTACTGCCCTTTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTATGAGTGTCCCTATTGTCATAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGGAAAGGAGTAATGGTGAAAAGGAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAACTGAAATGTTGCAGATATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTAGTGGATGTGAACACATGAAATGCAGGTTATATCACTGA 987 0.4073 MHVATQIQQNILNVNCPDPNCCVELEPQYLQPIFPREVVDRWEAARFESSIASKQKTYCPFKDCSVLLVNDEGEVVTSSECPYCHRLFCAQCKVPWHAGMDCEEFQELERSNGEKELEKNHLQNKTKVKSSTINSVGQSSKCFCTICFDFKTEAEMFGTSGECNHSFCAECISMHVATQIQQNILNVNCPDPNCCVELEPQYLQPILPREVVDRWEAARFESSIASKQKTYCPFKDCSVLLVNDEGEVVTSYECPYCHRLFCAQCKVPWHAGMDCEEFQELERSNGEKELESKFLELAKTEMLQICPKCSIYVQRSSGCEHMKCRLYH. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02786 328 ProSiteProfiles Zinc finger RING-type profile. 144 190 IPR001841 -
Seca6g02786 328 Coils Coil 105 125 - -
Seca6g02786 328 SUPERFAMILY RING/U-box 140 222 - -
Seca6g02786 328 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Seca6g02786 328 SUPERFAMILY RING/U-box 226 280 - -
Seca6g02786 328 ProSiteProfiles TRIAD supradomain profile. 140 328 IPR044066 -
Seca6g02786 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 112 IPR031127 GO:0004842|GO:0016567
Seca6g02786 328 CDD BRcat_RBR_unk 226 278 - -
Seca6g02786 328 Pfam IBR domain, a half RING-finger domain 214 275 IPR002867 GO:0008270
Seca6g02786 328 Pfam IBR domain, a half RING-finger domain 41 102 IPR002867 GO:0008270
Seca6g02786 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Seca6g02786 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 228 IPR013083 -
Seca6g02786 328 SUPERFAMILY RING/U-box 294 324 - -
Seca6g02786 328 SUPERFAMILY RING/U-box 53 107 - -
Seca6g02786 328 SMART ibrneu5 40 102 IPR002867 GO:0008270
Seca6g02786 328 SMART ibrneu5 213 275 IPR002867 GO:0008270
Seca6g02786 328 FunFam RBR-type E3 ubiquitin transferase 139 226 - -
Seca6g02786 328 CDD BRcat_RBR_unk 53 105 - -
Seca6g02786 328 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 IPR018957 GO:0046872
Seca6g02786 328 Gene3D - 272 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02786 Seca-Chr6 92882926 92890066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02786 125 325 C3H Transcription Factor Family AT2G19610 26.168 2.70e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02786 K11975 - mtr:25490784 268.855