Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02784 ATGGATTGTGAGGAATTCCAAGAGTTGGAAAGGAGTAATGGTGAAAAGGAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAACTGAAATGTGGCAGATATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTAGTGGATGTGAACACATGAAATGCAGGTGTGGATGCAGCTTCTGCTACATCTGTGGGAAGGTTTGGGAGTATGGACATATATGCAATGAATCTCAGTCTACTTGA 237 0.4177 MDCEEFQELERSNGEKELESKFLELAKTEMWQICPKCSIYVQRSSGCEHMKCRCGCSFCYICGKVWEYGHICNESQST. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02784 78 Pfam IBR domain, a half RING-finger domain 20 72 IPR002867 GO:0008270
Seca6g02784 78 ProSiteProfiles TRIAD supradomain profile. 1 78 IPR044066 -
Seca6g02784 78 Gene3D - 1 78 - -
Seca6g02784 78 CDD Rcat_RBR_unk 30 66 - -
Seca6g02784 78 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 70 IPR031127 GO:0004842|GO:0016567
Seca6g02784 78 SUPERFAMILY RING/U-box 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02784 Seca-Chr6 92865733 92866051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02784 32 70 ARIADNE family AT3G27720 46.154 1.01e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02784 K11975 - mtr:25481406 119.012