Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02778 ATGTCCAACTACATGCATCAAAAACATGTTCTTAACAGAACTTGGAGTTCCCATGCAGCAACTAATACAAAAAGGAGTATACCAAGTACAATGAATAGAAAATTTCACTGTGATGATTTTGATCTAGAGAAGAAGAGAAAAGCAGCAAGTGAAAGTTTTCAATCACTCCATGATCCTCACAAGGACATGACAGCAATAAACAACAACCGGTTAAAGTTGATTATTTCACCCTCAATATCCTGCATTTGCTCTATATGCTTTGATTCCAAAACAGGGCCTGATATGTTCAGAAGAGGAAACTGCAACCATAGATTTTGCACTGACTGCATGTCCAAACATGCTGCTGCTAAAATACAACAACATATTGTGAAGGTGAAATGTCCAAATCCAGAATGTTATGCGGAATTGGAGCCAGAATATTTGGAATCTGTTTTGCCTGAAGAAGTCATTGTTCAATGGAAATCTCTAATATATGAGTATTCAATTGATTGGTGGAAAAAGATTTACTGTCCTCTTGAGAATTGCTCTGGTTTTTTGGTGAATGATGGAAAAAAAGCTGTGACTAGAGCTGAATGCCCTTCCTGTCATGGGCTATTCTGTGCCAAGTGTAAGGTTCCATGGCATGAAGGAAAGAAGTGCAAGGAAATCAAGATGAAAAGGTGGAAAGTTGAAAAGGATTTGAATAAGAAGTTTCTAGATTTGGCCAAAAAAAAGATGTGGAAGAAATGTCCCAAATGTACTTTGTATGTTGAAAGACATGGTGGATGTGAACACATGAACTGCAGGTGTGGATGTGACTTCTGCTATCACTGTGGGAAGGATTGGAGGTTTGGACATACATGTAAGGAATTCCGCACAATATTTTACAGCAGATTGTATAAATGTCGTAAGCTCATGCGCCAAATATGGAGGAAGATCTAG 921 0.3811 MSNYMHQKHVLNRTWSSHAATNTKRSIPSTMNRKFHCDDFDLEKKRKAASESFQSLHDPHKDMTAINNNRLKLIISPSISCICSICFDSKTGPDMFRRGNCNHRFCTDCMSKHAAAKIQQHIVKVKCPNPECYAELEPEYLESVLPEEVIVQWKSLIYEYSIDWWKKIYCPLENCSGFLVNDGKKAVTRAECPSCHGLFCAKCKVPWHEGKKCKEIKMKRWKVEKDLNKKFLDLAKKKMWKKCPKCTLYVERHGGCEHMNCRCGCDFCYHCGKDWRFGHTCKEFRTIFYSRLYKCRKLMRQIWRKI. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02778 306 Gene3D - 212 301 - -
Seca6g02778 306 Pfam IBR domain, a half RING-finger domain 227 281 IPR002867 GO:0008270
Seca6g02778 306 Pfam IBR domain, a half RING-finger domain 162 213 IPR002867 GO:0008270
Seca6g02778 306 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 43 286 IPR031127 GO:0004842|GO:0016567
Seca6g02778 306 ProSiteProfiles TRIAD supradomain profile. 79 290 IPR044066 -
Seca6g02778 306 SUPERFAMILY RING/U-box 82 163 - -
Seca6g02778 306 SUPERFAMILY RING/U-box 158 218 - -
Seca6g02778 306 FunFam RBR-type E3 ubiquitin transferase 79 164 - -
Seca6g02778 306 ProSitePatterns Zinc finger RING-type signature. 101 110 IPR017907 -
Seca6g02778 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
Seca6g02778 306 ProSiteProfiles Zinc finger RING-type profile. 83 128 IPR001841 -
Seca6g02778 306 SUPERFAMILY RING/U-box 232 285 - -
Seca6g02778 306 SMART ibrneu5 151 213 IPR002867 GO:0008270
Seca6g02778 306 SMART ibrneu5 219 281 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02778 Seca-Chr6 92783745 92785438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02778 83 272 C3H Transcription Factor Family AT2G19610 31.343 1.15e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02778 K11975 - lang:109340029 269.626