Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02777 ATGTTTTTCAAAGCAACCATACACCCCGTTGCCAACGCCCTCCAACTCATCCAACTTGTCATCAACCTAATCAAACTGGGGATAAAGTATTTTGTTGATAATTGTGATAGACACAAGAGTAATCAACCCTCAAAATGCCTTTGTGCTATATGTTTCGATTTCAAACCAGCCATTAACATCTTCACAGGATGTAATTGCGATCATCCCTTTTGCACTGATTGTATATCCAAGCACGTGGCTGCTAAAATACAGCAAAACATTCTCAAGGTGAATTGTCCAAATCCAAATTGTTCTGAGGAACTAAAGCCACAAAATTTGCAAAATACTTTGCCTAAAGAGGTTATTGATCGATGGGAATCTGCAAGGTACGAGTCTTCTATTGTTGGGTGGCAAAAGAGTTATTGCCCTTTTCAGGATTGTTCTGTTTTGTTGGTGAATGATGGGGGAGAAGTTGTGACAACTGCTGAGTGCCCTTCCTGTCACAGGCTGTTTTGTGCACAGTGTAGGGTTCCTTGGCATGCAGGAATGAATTGCAAGGAATTCCAAAAGAAACTGAAAAGGGTTAAACATGAAAAGGATTTGGATAAGAAGTTTGTGGAGTTGGCCAAACGAAACATGTGGCCCACATGTCCCAAATGCAAGATGTATGTACAGAGACAAAGTGGATGTGAACATATGACCTGCAGGGTGTGGATGCAACTTCTGTTACAAGTGTGGAAAGAGATGGAAGTTTGGACATATATGCTAATAGCAGAACAGTTAGAAACTCTCCTAGTCCTGGCAAATATACTGGAAGTTCTAGCTATTCATCACAAGGGAAGAAAATTTGGTAGCTGGCATTCTAGCTAA 849 0.4075 MFFKATIHPVANALQLIQLVINLIKLGIKYFVDNCDRHKSNQPSKCLCAICFDFKPAINIFTGCNCDHPFCTDCISKHVAAKIQQNILKVNCPNPNCSEELKPQNLQNTLPKEVIDRWESARYESSIVGWQKSYCPFQDCSVLLVNDGGEVVTTAECPSCHRLFCAQCRVPWHAGMNCKEFQKKLKRVKHEKDLDKKFVELAKRNMWPTCPKCKMYVQRQSGCEHMTCRVWMQLLLQVWKEMEVWTYMLIAEQLETLLVLANILEVLAIHHKGRKFGSWHSS. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02777 282 SUPERFAMILY RING/U-box 131 184 - -
Seca6g02777 282 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Seca6g02777 282 ProSiteProfiles Zinc finger RING-type profile. 48 93 IPR001841 -
Seca6g02777 282 SMART ibrneu5 116 178 IPR002867 GO:0008270
Seca6g02777 282 CDD BRcat_RBR_unk 131 181 - -
Seca6g02777 282 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 232 IPR031127 GO:0004842|GO:0016567
Seca6g02777 282 SUPERFAMILY RING/U-box 196 228 - -
Seca6g02777 282 SUPERFAMILY RING/U-box 45 125 - -
Seca6g02777 282 Pfam IBR domain, a half RING-finger domain 131 178 IPR002867 GO:0008270
Seca6g02777 282 FunFam RBR-type E3 ubiquitin transferase 43 129 - -
Seca6g02777 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 129 IPR013083 -
Seca6g02777 282 ProSiteProfiles TRIAD supradomain profile. 44 282 IPR044066 -
Seca6g02777 282 Gene3D - 175 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02777 Seca-Chr6 92769404 92771656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02777 48 229 C3H Transcription Factor Family AT2G19610 27.835 5.82e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02777 K11975 - lang:109340029 261.151