Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02775 ATGATTTGGTTATGTATGTGTAGGTCGAGGATATGTGTTAAGAATCTCCCAAAATATGTTGTGGAGGATCGACTGAGAGAATTATTTTCTCAGAAAGGGGAAATCACTGATGTCAAGCTTATGCGTACCAAAGATGGTAGGAGTCGCCAATTTGCTTTTATTGGATTTCGTACTGACCATGAAGCTGAGGAAGCCATTCGATATTTCAATAAATCTTATATTGACACATCTAAAATTATGTGTGAGGTGAGAACTAAAGACAATGTGATCACCCCAGATGCAAACAAATACACTAGAGCTAAAGGACAAGGAGACAAGTCTAAGGACATTGTTGATATTAATGACCCACAACTTCAAGATTTTCTTCAGGTCATGCAACCTCGAACTAGGTCTAAACTGTGGGCAAATGATACATCAATTGTATCAAATAAGGACAATAAAGGCACATCAGATGCAATCCATGCTGCCCTAGTTCCATCTGGACATCCAAATAATCTTGAACCCAACAAGTCATATGAGATTGAACATGATGAAGTGATTTCTGATATGGATTATTTCAAGAGTAGAGTGATAACTGAGTGGTCTGATTCTGAAAAAAGTGATGGTGGAGATGATGATGAAGAAAATGATTCAATGTGCATTGATGATGAGAAAGACAATCATACTTGTGGAAAGGGTGTTACCTATGATAAAGCTCAAGTGAAGCAAGAGGGCCAATCATCAAATCATGAAGATGAGAAAGGAGTTTTTGATTCTTCTCGACTGTTTGTCCGTAATCTGCTATATTCAACCACTGTGGAAGAACTGCAAAATCACATTGAGGAAAAATTGCAAAAGCATTTCAATAAGTTAAAATGTGTCTCAAAGGTTCATCTAGTTGTTGATAGAAATACAAAACAATCCAAAGGAGTAGCATATATTCGTTTTCCAGATTCAGAATTTGCAGCCAGGGCGCTTAAAGTGTTAGATGGTTCAATCTGTCAAGGAAGATTGTTGCACATCATGCCAGCCATACAAAGACCTTCAAACAATAAAGAGAACAATGTCTCAAAGAACGAAAACTCCAAAACTTTCAAGCAGCAGAGAGAGGAAAAGAGGAAAGCAGCTGAAGCTAGCGGAGATACTAGAGCATGGAATTGTTTGTTCATGCGCTCTGATACAATTATGGAATACATTGCTCGGAAATATGGCGTTAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCGGTGCGCATTGCTCTGGGAGAAACTCAAGTGGATGCTCCATTATACTTAGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAGTAATGAAATGAATAGCGGAGTTGGCAGAGATGTTGCTAAGCGTCTGATATTAGAGCAAGACATAGAAAGAATATCAGATGTGGATATTGATCCAGACCGAGTAGAGACTCGGACCCTGTTTGTCAAGAACCTAAATTTCAAGACAACGGATGAGTGTTTGAGGAAACATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGTATTTGAAAAATGGGAAATATGTTCCTTCGGGGTATGGATTTGTTGAGTTTGACTCCACAGAGATTGCTACAAATGTTTGTAGTGAATTACAGGGTTCTGCTTTGGACGGACATGCTCTTAAATTACAACTCTGTCGTGTCAAGAATGATAGACAAGTACCAATGACTGTTGAAAAGGGTTATAGTTCAACAAAATTGATCATAAAAATTTTTGCTTTTGAGGCAGCGAAGAAGGATCTAAAAGATTTGTTATGCACCTTTGGCGAGTTTGGAGGTCATAGAGGCTTTGCTTTCGTAGAGTATGTTACTCAGCAGGAGACACAAAATGCTCTTAAAGCACTTTTTGACATCCACTTTCATGGAAGGCATCTGGGGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAATTTAGTAAAGCTAATGGATTTCAAAATGCTACTAAGTTATGCAAGAAAAGGAAGCACATTAGTATCTTAGATGAAGGAAACATGTAG 2073 0.3849 MIWLCMCRSRICVKNLPKYVVEDRLRELFSQKGEITDVKLMRTKDGRSRQFAFIGFRTDHEAEEAIRYFNKSYIDTSKIMCEVRTKDNVITPDANKYTRAKGQGDKSKDIVDINDPQLQDFLQVMQPRTRSKLWANDTSIVSNKDNKGTSDAIHAALVPSGHPNNLEPNKSYEIEHDEVISDMDYFKSRVITEWSDSEKSDGGDDDEENDSMCIDDEKDNHTCGKGVTYDKAQVKQEGQSSNHEDEKGVFDSSRLFVRNLLYSTTVEELQNHIEEKLQKHFNKLKCVSKVHLVVDRNTKQSKGVAYIRFPDSEFAARALKVLDGSICQGRLLHIMPAIQRPSNNKENNVSKNENSKTFKQQREEKRKAAEASGDTRAWNCLFMRSDTIMEYIARKYGVSKSDLLDREADDLAVRIALGETQVDAPLYLEWAPSNILSQSSTSKSNEMNSGVGRDVAKRLILEQDIERISDVDIDPDRVETRTLFVKNLNFKTTDECLRKHFSEHMKEGRILSVKVKKYLKNGKYVPSGYGFVEFDSTEIATNVCSELQGSALDGHALKLQLCRVKNDRQVPMTVEKGYSSTKLIIKIFAFEAAKKDLKDLLCTFGEFGGHRGFAFVEYVTQQETQNALKALFDIHFHGRHLGIERAKEGESLDELRARTAAQFSKANGFQNATKLCKKRKHISILDEGNM. 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02775 690 SMART rrm1_1 582 644 IPR000504 GO:0003723
Seca6g02775 690 SMART rrm1_1 254 335 IPR000504 GO:0003723
Seca6g02775 690 SMART rrm1_1 10 82 IPR000504 GO:0003723
Seca6g02775 690 SMART rrm1_1 482 560 IPR000504 GO:0003723
Seca6g02775 690 CDD RRM1_MRD1 9 83 - -
Seca6g02775 690 SUPERFAMILY RNA-binding domain, RBD 480 648 IPR035979 GO:0003676
Seca6g02775 690 MobiDBLite consensus disorder prediction 339 370 - -
Seca6g02775 690 Gene3D - 187 352 IPR012677 -
Seca6g02775 690 Gene3D - 436 573 IPR012677 -
Seca6g02775 690 SUPERFAMILY RNA-binding domain, RBD 239 348 IPR035979 GO:0003676
Seca6g02775 690 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 462 573 - -
Seca6g02775 690 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 339 IPR000504 GO:0003723
Seca6g02775 690 MobiDBLite consensus disorder prediction 356 370 - -
Seca6g02775 690 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 564 IPR000504 GO:0003723
Seca6g02775 690 Gene3D - 574 671 IPR012677 -
Seca6g02775 690 Gene3D - 7 112 IPR012677 -
Seca6g02775 690 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 332 IPR000504 GO:0003723
Seca6g02775 690 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca6g02775 690 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 558 IPR000504 GO:0003723
Seca6g02775 690 MobiDBLite consensus disorder prediction 194 219 - -
Seca6g02775 690 CDD RRM5_RBM19_like 482 562 IPR034423 -
Seca6g02775 690 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 86 IPR000504 GO:0003723
Seca6g02775 690 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 581 648 IPR000504 GO:0003723
Seca6g02775 690 MobiDBLite consensus disorder prediction 199 213 - -
Seca6g02775 690 PANTHER RNA-BINDING MOTIF PROTEIN 14B 274 566 - -
Seca6g02775 690 MobiDBLite consensus disorder prediction 340 355 - -
Seca6g02775 690 SUPERFAMILY RNA-binding domain, RBD 10 273 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02775 Seca-Chr6 92752040 92759171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02775 9 83 Eukaryotic Initiation Factors Gene Family AT4G34110 32.000 2.10e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02775 K14787 - gmx:100798742 475.707