Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02766 ATGAAGTGGGAAATGGAAATCCTCCCTCCTGCACCATATATTCACAACTCCAACAGCACCAATTGGTTTCTTGAAGATAACAGGAACACCAAATGGACTCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAAGTAGCTGAAATGATACCAGGAAAGACAGTTGTGGATGTGATGAAGCAGTACAAGGAGTTAGAAGCAGATGTTTGTAACATAGAAGCTGGTTTGATCCCAATTCCTGGCTACAGTACCACCACCTCACCCTTCACCTTAGATTGGGTCAACACTCCTGGGTATGATGGTTTTAAAGGACTCACTGCAAAGAGATCCTCCTCAGGCAGAACCCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAATTATTTCTACTGGGTCTGAAAAAGTATGGCAAAGGTGATTGGAGGAATATATCACGTAATTTTGTGATTACTAGAACCCCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATTCATGACATAACAACTGTTAATCTCACAGAACCAACCAGAACTTCTCTTTCAGAAGACAACAAGAGATCCACTTCACCACAACATTCCTTGATGCTCTCTCACCAGCTTCCAGATTCTACTGCTACCACATCTGGGTTGCATTTTCAGTGGAATAATAATAATCAGCCAAATGCAGTAGCAACAACTATGGCTCCTAATCTTGCAAATGAACAAGTATTCATGACTCCTTATGGGGTTAACTCCTTTGGTTTTAAAATGCAGGGCCAAAATCTTCACAGAAGTCCTCTTCATGGGTCTTCTTACTTAGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCCTCTCAACACTATTCCCATGCATGA 960 0.4281 MKWEMEILPPAPYIHNSNSTNWFLEDNRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVVDVMKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRTPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEPTRTSLSEDNKRSTSPQHSLMLSHQLPDSTATTSGLHFQWNNNNQPNAVATTMAPNLANEQVFMTPYGVNSFGFKMQGQNLHRSPLHGSSYLGPQTQNMVFQMQSSQHYSHA. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02766 319 CDD SANT 137 182 IPR001005 -
Seca6g02766 319 MobiDBLite consensus disorder prediction 206 227 - -
Seca6g02766 319 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Seca6g02766 319 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Seca6g02766 319 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Seca6g02766 319 Gene3D - 25 91 - -
Seca6g02766 319 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Seca6g02766 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Seca6g02766 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Seca6g02766 319 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 261 IPR043363 -
Seca6g02766 319 Gene3D - 136 186 - -
Seca6g02766 319 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Seca6g02766 319 CDD SANT 31 77 IPR001005 -
Seca6g02766 319 SUPERFAMILY Homeodomain-like 132 185 IPR009057 -
Seca6g02766 319 FunFam Transcription factor SRM1 24 91 - -
Seca6g02766 319 FunFam transcription factor MYB1R1 136 187 - -
Seca6g02766 319 SMART sant 134 184 IPR001005 -
Seca6g02766 319 SMART sant 28 80 IPR001005 -
Seca6g02766 319 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02766 Seca-Chr6 92543010 92545308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g02766 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02766 - - gmx:100784163 511.916