Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02742 ATGATGAAAATGGTTCCATCAAGGAGGCTACAGGGTTACTCAAAGATGGATAAGGAAGACCCAGAAGAGAGAATGCATAGAAAAGCACAATTCTTAATCTACAGAGTTTTAGAGAAAGCAGATTCTCATGGAAAGCCATCATGTGTGAAGATCAAAATGTTCAAGTTGAAGATTAAGATAGGATCTGTCCGTGCCAAAAATGCCATGAACATAATGCTCACCAACGTGGTTGATGCTGTGGTAGGTAGCATCTCCTTCTACCTTTTTGGTTTTGCATTTGCCTATGGCAATTCCAACCCTTTCATTGGTACCGATTTCTTTGCTTTAGCTAAGATTCCAAATGGCACTTATGACTATAGTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCCGTAGGAGGCATCACTAGTGGGTCTATAGCTGAGAGAACCCAATTCTGTGCCTATCTTGTTTTTTCATTTTTCCTTACTGGGTTTGTCTACCCAGTTGTGGTCCATTGGGTGTGGTCATCCACTGGTTGGCTTAGTCCCAGTTCTAGTGACTTGTTCCTGGGCTCAGGTGCCATTGACTTTGCAGGTAGTGGAGTGGTGCATTTGGTTGGTGCAATTGCTGGGCTTTGGGGATCTATCATAGAAGGCCCACGGGTTGGCCGGTTTGATGTTTTTGGCAAGCCCATACCTCTCCGAGGCCACAATGCAACACTTGTGGTGCTAGGAACTTTTTTGTTGTGGTTTGGTTGGTTCGGATTTAACCCAGGTTCGTTCGATCGGATCGTCGTGGCTTACCCTAGTACATCCGATGAAGGTAATTGGACTTCAGTGGGTCGAACCGCCTTGACAACCACGTTAGCGGGCTCAACCGCCGGGCTTGTCACCTTGTTCGGCCGCCGGTTGTTGATAGGTCATTGGGATGCAATGGATGTTTGCAATGGCTTGCTTGGTGGGTTTGTTGCCATCACCTCTGGGTGTTCAGTTGTAGAGCCATGGGCTGCCATTGTTTGCGGGTTCGTCTCAGCATGGGTCTTAATTGGGCTCAACATCTTAGCACTAAAATTGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGTGGGTGTGGGATTTGGGGTTTGTTGTTTACAGGGCTGTTTGCTAAAGAGGAGTTTGTGATTCAAGCCTATAATTCAGGGGTGGCAGTGAAAAGACCCTATGGGCTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCCCAAGTGGTTGAGATTTTGGTAATTGTTGGATGGGTTAGTGCAACAATGGGCCCCATGTTCTACGCCTTGCACAAGCTTAATATACTGAGAATTCCTAGGGATGATGAACTTGCTGGCCTTGATATCTCAACCCATGGAGGCTATGCTTATGCTCCTCAAGAGGATCATTATCCACGATCTTATGGAGATTATATGCATATCCAGGATGGCCAATCATAG 1452 0.4614 MMKMVPSRRLQGYSKMDKEDPEERMHRKAQFLIYRVLEKADSHGKPSCVKIKMFKLKIKIGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTDFFALAKIPNGTYDYSFFLYQWAFAIAVGGITSGSIAERTQFCAYLVFSFFLTGFVYPVVVHWVWSSTGWLSPSSSDLFLGSGAIDFAGSGVVHLVGAIAGLWGSIIEGPRVGRFDVFGKPIPLRGHNATLVVLGTFLLWFGWFGFNPGSFDRIVVAYPSTSDEGNWTSVGRTALTTTLAGSTAGLVTLFGRRLLIGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAIVCGFVSAWVLIGLNILALKLNYDDPLEAAQLHGGCGIWGLLFTGLFAKEEFVIQAYNSGVAVKRPYGLLLGGGWGLIGAQVVEILVIVGWVSATMGPMFYALHKLNILRIPRDDELAGLDISTHGGYAYAPQEDHYPRSYGDYMHIQDGQS. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02742 483 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g02742 483 Pfam Ammonium Transporter Family 59 461 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca6g02742 483 NCBIfam ammonium transporter 60 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca6g02742 483 SUPERFAMILY Ammonium transporter 60 442 - -
Seca6g02742 483 PANTHER AMMONIUM TRANSPORTER 59 457 - -
Seca6g02742 483 FunFam Ammonium transporter 51 474 - -
Seca6g02742 483 ProSitePatterns Ammonium transporters signature. 190 215 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca6g02742 483 Gene3D Ammonium transporter AmtB like domains 56 473 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02742 Seca-Chr6 92135005 92138353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02742 61 466 Inorganic Solute Cotransporters AT1G64780 67.797 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02742 K03320 - pvy:116129597 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02742 6 92135005 92138353 Seca6g02742 6 92135005 92138353 ECH