Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02722 ATGCCGACGCCGGTAAGCACAGCGAGGCAATGCTTAACAGAGGAAGCGGCGCGTGCGTTGGACGATGCAGTTGCGGTAGCGCGGCGGCGAAGCCACGCGCAGACGACGTCGCTTCACGCTGTCTCTGCCTTGCTGTCTCTTCCCTCCGCCGCGCTACGCGACGCGTGCGCGCGTGCCGGAAGCTGTTCCTACTCGCCGCGCCTTCAGTTCCGCGCTTTAGAGCTCTCCGTCGGCGTCTCCCTCGACCGACTCCCAACCTCCAAGCCCTCCGCCACCTCCGGCGACGGCGACGACGACGGTCCTCCGGTGTCGAACTCCCTCATGGCCGCAATCAAACGCTCTCAGGCGAACCAACGCCGCCACCCTGATAGCTTCCACTTGATCCAAATGATGCAGCAGCAACAACAACACCAGCAACAGCACCAAACGGCGTCGCTTTTGAAGGTGGAGTTGAAGCACTTCATTCTCTCGATCCTTGATGATCCTATCGTTAGCCGTGTCTTCGCTGAAGCTGGTTTTCGAAGCTATGATATTAAGCTTGCTTTGCTTCAACCACCACCACCTCCTTTTTCTTCTTCTTCTTCTTCTAGATTCTTCTCTCGCCGGTCACCGCCGGTTTTTCTATGCAACCTTGAACCGGCTCGGTCCGGTTTCACCTTCCCTTTTGCCGGTTTCGATGAGAATTCCAGAAGGGTTGCTGAGGTTCTTGCTAGGAAGAACAAAAGGAACCCTCTTTTGATGGGGGTGTATGCTAAAACCGCTCTTAAGAGCTTCATTGAGTCTTTGCAGATGGGTAAGGTGGGAGTTTTGCCTAGTGAGCTTGTTGGGTTGAGCGTGGTTTCTGTTGAGAAGGAGATTTCTGAGTTTGTGGGTGGAAGTGGGAGCGAGGAGAAGATCGGGTTGAGGTTTGAGGAGGTGGGTCGTTTGGTGGAGCAATGTTCTGGCCCTGGTGTTGTGGTGAGCTTTGGGGAAATTGAGGTTTTTATTGGGAGGAGTAAAAATAATGATAATGATGATTGTGGTGGTGGTGGTGGATTTGTTGTTTCGCGGTTGACGAGGTTGTTGGAGGTTCATGGTGGGAAGGTTTGGTTGGTGGGGGTGGCGGGAACCTCTGAGGCCTATTCTAAGTTCTTGGGCTTGTTCCCTACCCTTGATAAAGATTGGGATCTGCATCTACTGACCGTGACTTCTGCTACCCCTTCGATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTTCTGATTTCAGAAATCCACTAACATCTTTAACTCGTTGTGACACATGCAATGAAAAATATGAACAAGAAGTTGCTGATGTTGTGAAGGTAGGCCCTGCTACCTCAGCATGCGGTTACTCAACAAGCTTGCCTTGGTTACAAAAGGTGAATGTGGAGACAGATAGAGGATTGGATTTGGCAAAGAATGAACTTCATCATCCAGTGCAGACTAATGAAGAAAACACAAGTTTGAATGCTAAGATCTTTGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGATCATTGCCTGAAATTGGTGTTTCCCAGACAGTAACAAGGTTCCAAGCTCCATTCCATGAGGGTCTTCAGTTTGGTTCAGGTGTTAATGGAAGCAGTAGTAAAATTCCATCCCTTAATGAAATCCAATGTTCTAATCAAATTTCCTACATGTCTAAAGAGTTACAAAATGCATTTCCATCTAAACAGATATTACCAGTTTCAGTACCTTTTGATACTGTTAATGTCAATGATGAACCTGACCATGTACCAAAAGTTTCAAAAAGTGACATGCATAATAATTGGGTTGTTTCCCCTCCCCCTAAGGCCAATATGAGTCTGCTTGATCACAGATCATCTGCACCCCTTACTACTGTGACCACAGATTTGGTGTTGGGAACTAAATATACATCAGCTACTCATGAGCCAGATACCCCCAAACTAAGTGATCATAGAAAGCATCTTCAGCAGCACTTGTCAGACTCCCTTTCAACTGATTTTGATGCAGTGAATGAGGGTACTTCACACCAAATTGCTAGGTCTTCTTCTTGCTCTGGTCCAAATTTGGAAGGGAAATTTGAAACTGTAGATTTCAAGTCACTTTACCAACTTCTCACTGAAAAGGTTGGGTGGCAAAATGAGGCTATATATGCCATCATTCGAACCATGTCACGTTGTAGATCCGGTGTTGGAAAGCGCAGTGCATCACATGTTAGAGCAGACATATGGCTTGCTTTCCTTGGACCAGATAGAATTGGAAAGAGAAAAATTGCTTCAGCACTTGCTGAGATTTTATTTGGAAACAGACAGAGCCTAATCTCTGTGGATTTGAGCTCCCAGGACAGGTTTTACCCATTAAACTCAGTTTTTGAATTCCAAAATTCATGTTGTGATGATGTGCTTAGGAGGAAGACTGTTGTGGACTATATTGCTGGGGAGTTGAGTAAAAAGCCACATTCAGTTGTCTTTCTTGAAAATGTTGATAAAGCTGATTTTTTGGTGCAAAATAGTTTGTTCCAAGCAATAAAAACAGGTAAATTTCCATACTCACTTGGAAGGGAAATCAGCATCAACAATGCAATCTTTATTGTAACATCAACTGTGGTTAAAGGTAATGGCTCTTTTGATTTGGAAAAAGGACCTAAAATGTTTCTAGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTCAATTATCACTTGGACATGCTTCTGAGGATGCCAAAAGAAGTGGTAGCACAAACGTGAAGATTGCACAGAAAAAAGGGACATCCAAACCAACATTTCTGAATAAAAGAAAGCTAGTTGAAAATAGTGATTCCAAAGAGAAAGCAACATGCAAGACACAAAAACAGGCCAAGGAGGCATCAAGGTCCTATCTGGATCTGAATATGCCTCTAGAGGAGGTTGAAGAAGGCACCAATTACAGTGATTGTGAAAGTGAATCTGTAGTGGAAAATCCTGAAGCCTGGTTAAATGATTTCTATGATCAAATTGATGAAAAAGTGATTTTTAAGCCATTCAAATTTGATTCTCTTGCTGAGCAAGTAATAGAATGCATTGACAAACAATTTCAAAGAGCATTTGGATCAGAGTTTCTGCTGGAAATTGATTTTGAGGTCATGGCACAGATACTTGCAGCTGCTTGGTTATCAGACAACAAAAAAGCAGTGGAGGATTGGGTTGAACATGTTCTTGGAAGAAGCTTTGCTGAGGCCAGAAAGAAGTACCACCCTGCAGATGAATATGTTATGAAACTGGTTAATTGTGAAAGCTATTTTGTGGAAGGGCAAGCTTCAGGAGTATGCCTTCCACCTAGAATTAACTTGAACTAA 3384 0.4441 MPTPVSTARQCLTEEAARALDDAVAVARRRSHAQTTSLHAVSALLSLPSAALRDACARAGSCSYSPRLQFRALELSVGVSLDRLPTSKPSATSGDGDDDGPPVSNSLMAAIKRSQANQRRHPDSFHLIQMMQQQQQHQQQHQTASLLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQPPPPPFSSSSSSRFFSRRSPPVFLCNLEPARSGFTFPFAGFDENSRRVAEVLARKNKRNPLLMGVYAKTALKSFIESLQMGKVGVLPSELVGLSVVSVEKEISEFVGGSGSEEKIGLRFEEVGRLVEQCSGPGVVVSFGEIEVFIGRSKNNDNDDCGGGGGFVVSRLTRLLEVHGGKVWLVGVAGTSEAYSKFLGLFPTLDKDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPLTSLTRCDTCNEKYEQEVADVVKVGPATSACGYSTSLPWLQKVNVETDRGLDLAKNELHHPVQTNEENTSLNAKIFGLQRKWSDICQRLHQNRSLPEIGVSQTVTRFQAPFHEGLQFGSGVNGSSSKIPSLNEIQCSNQISYMSKELQNAFPSKQILPVSVPFDTVNVNDEPDHVPKVSKSDMHNNWVVSPPPKANMSLLDHRSSAPLTTVTTDLVLGTKYTSATHEPDTPKLSDHRKHLQQHLSDSLSTDFDAVNEGTSHQIARSSSCSGPNLEGKFETVDFKSLYQLLTEKVGWQNEAIYAIIRTMSRCRSGVGKRSASHVRADIWLAFLGPDRIGKRKIASALAEILFGNRQSLISVDLSSQDRFYPLNSVFEFQNSCCDDVLRRKTVVDYIAGELSKKPHSVVFLENVDKADFLVQNSLFQAIKTGKFPYSLGREISINNAIFIVTSTVVKGNGSFDLEKGPKMFLEERILEAKRCQIQLSLGHASEDAKRSGSTNVKIAQKKGTSKPTFLNKRKLVENSDSKEKATCKTQKQAKEASRSYLDLNMPLEEVEEGTNYSDCESESVVENPEAWLNDFYDQIDEKVIFKPFKFDSLAEQVIECIDKQFQRAFGSEFLLEIDFEVMAQILAAAWLSDNKKAVEDWVEHVLGRSFAEARKKYHPADEYVMKLVNCESYFVEGQASGVCLPPRINLN. 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02722 1127 Pfam AAA domain (Cdc48 subfamily) 760 886 IPR003959 GO:0005524|GO:0016887
Seca6g02722 1127 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1101 - -
Seca6g02722 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 1101 IPR027417 -
Seca6g02722 1127 CDD RecA-like_ClpB_Hsp104-like 713 882 - -
Seca6g02722 1127 SUPERFAMILY Double Clp-N motif 12 125 IPR036628 -
Seca6g02722 1127 Gene3D - 211 389 IPR027417 -
Seca6g02722 1127 ProSiteProfiles Clp repeat (R) domain profile. 8 188 IPR004176 -
Seca6g02722 1127 MobiDBLite consensus disorder prediction 84 105 - -
Seca6g02722 1127 Gene3D - 10 184 IPR036628 -
Seca6g02722 1127 Gene3D - 692 950 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02722 Seca-Chr6 91869327 91874734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02722 - - gmx:100776148 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02722 6 91869327 91874734 Seca6g02722 6 91869327 91874734 ECH
Seca6g02722 6 91869327 91874734 Seca6g02089 6 80789479 80795563 ECH
Seca8g01582 8 29334737 29338039 Seca6g02722 6 91869327 91874734 ECH
Seca6g02089 6 80789479 80795563 Seca6g02722 6 91869327 91874734 ECH
Seca2g04894 2 135398618 135401521 Seca6g02722 6 91869327 91874734 ECH
Seca8g01582 8 29334737 29338039 Seca6g02722 6 91869327 91874734 PCT