Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02721 ATGTGCAGCGGTTCCAAGAGGAAACCCTCTCAACTTGGTTTGATTATGGAGGATGAGTATGGAAGATCAGAAGGAATGCATCATAAATTTTCTGCTTTGCTTGAGTTTTCAGCTACAGATGATGTAATGGCTCTCAAGTATGCAGTTGAAAAAGAGGGTCATGATGTTGATGAGGTGGGATTGTGGTATGGAAGGAGGGTTGGTTCAAAGGAAATGGGTTATGAAGAGAGGACCCCTCTTTTGATTGCTGCTATGTTTGGAAGCAAGGGTGTACTATCTTATATTCTGGGAACAGGTCGTGTTGATGTTAACCAGACTCATGGGTCAGATGGTGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCCTGAAGTAATCAAGTTTTTGCTTGATGCATCTGCAGATGTTAGTATTGTTGATGCCAGTGGTAAACGGTCCTGTGACTTGATTGTTTCTGTGTCTAATAGTATTTTCAATTCAAGGAAGAGGATACTACAAGCCATTCTAGAAGGTGCAAATGATATTGATGAGTCTTGCCTTACATTTAAGGAATCAATTGACCAAATGGAGAAACAGCAGCAACAAGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTGTCTCTTCCAGACATAAAGAATGGGATATACAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAAAATGCAAGGAGGCGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGCCCTGAGTTCCGGAAGGGATCCTGCAGTAAGGGGGATACTTGTGAATATGCACATGGTATTTTTGAAACCCGGCTTTGCAAGGATGAGATTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAGCCAGAGGAGCTTCGCCCGTTGTATGCTTCTACTGGTTCTGCTTTGCCTTCTCCCAGATCATATTCAGCAGCTAGTGCTTCTTCATTGGACACTTTCACACTAGGTTCTTCATCTGCCTCAACACCACCTTTGACTCCAACTGCATCTTCTCCTGTGGGTGGAACCTTGTGGCAGACTCAGTCTCATGCTGTAGTCCCTACCCTTCAGCTAACTGGAAGCAGATTGAAAACTGCATCAAATGCTAGAGATACTGATTTAGACATTGAATTGCTTGGACTTGAAAATCACAGGCTTATGCAACAGCTAATGTTAGAAGAGATGGTTGGTCTTTCATCCCCTTCCAAATGGCTTGCAGGAGTGAAGCCTACTAACCTTGAAGACTATTTTGGGTCTCAGATACAATCTCCAACTGGAATTCAGGTGCTTCAGAATGCTAACCAGCATCTACATGGCTATCCTTCCAACCTTTCCACTTCAAATGTGATTGGATCACCATTATACACAGCTGCAATGGCATTGAATCCAAGATATGCTGCCTTTTCACAGCGGAGCCAGAGCTTCATTGAGCATACCGGTGTGAACTGTAATTCTGAGCTTCTTTCTCATGCTACCCCTGTTTCTGTAGAGCCTTCTACCTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGGCCATCCGTGGAGATGAATTAAATAAGTTGAGGAAATCATCTTCTTTTGGATTTCGAAGCAGCAATAGTCCTTTAACAACCACAATGCCACCGGATGTTGATGAACCAGATGTATCTTGGGTTCATTCTCTTGTGAAGGATGCCACACCAATGGAATCTGGTCAGTATGGTGCTGAAGAGCAGTTGCAATGGCATAATGGAACAGATGCAGCTAGGCTGGAGCAATTGTACATGGAGCAGGAGCAGATGGTGGCATGA 1881 0.4381 MCSGSKRKPSQLGLIMEDEYGRSEGMHHKFSALLEFSATDDVMALKYAVEKEGHDVDEVGLWYGRRVGSKEMGYEERTPLLIAAMFGSKGVLSYILGTGRVDVNQTHGSDGATALHCAVAGGSAASPEVIKFLLDASADVSIVDASGKRSCDLIVSVSNSIFNSRKRILQAILEGANDIDESCLTFKESIDQMEKQQQQVSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDTCEYAHGIFETRLCKDEIGCTRRVCFFAHKPEELRPLYASTGSALPSPRSYSAASASSLDTFTLGSSSASTPPLTPTASSPVGGTLWQTQSHAVVPTLQLTGSRLKTASNARDTDLDIELLGLENHRLMQQLMLEEMVGLSSPSKWLAGVKPTNLEDYFGSQIQSPTGIQVLQNANQHLHGYPSNLSTSNVIGSPLYTAAMALNPRYAAFSQRSQSFIEHTGVNCNSELLSHATPVSVEPSTFSGWGSPDGKLDWAIRGDELNKLRKSSSFGFRSSNSPLTTTMPPDVDEPDVSWVHSLVKDATPMESGQYGAEEQLQWHNGTDAARLEQLYMEQEQMVA. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02721 626 Gene3D - 115 174 IPR036770 -
Seca6g02721 626 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Seca6g02721 626 Gene3D - 265 327 - -
Seca6g02721 626 Gene3D - 23 114 IPR036770 -
Seca6g02721 626 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Seca6g02721 626 Pfam Ankyrin repeats (3 copies) 57 143 IPR002110 GO:0005515
Seca6g02721 626 SMART ANK_2a 28 58 IPR002110 GO:0005515
Seca6g02721 626 SMART ANK_2a 110 142 IPR002110 GO:0005515
Seca6g02721 626 SMART ANK_2a 75 105 IPR002110 GO:0005515
Seca6g02721 626 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Seca6g02721 626 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Seca6g02721 626 PANTHER UNKEMPT FAMILY MEMBER 35 588 IPR045234 -
Seca6g02721 626 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Seca6g02721 626 SUPERFAMILY Ankyrin repeat 40 154 IPR036770 -
Seca6g02721 626 SMART c3hfinal6 268 294 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02721 Seca-Chr6 91847279 91849297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02721 28 596 C2H2 Transcription Factor Family AT5G12850 38.073 1.14e-130 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g02721 Ank_2 4.9e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02721 - - aprc:113846970 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02721 6 91847279 91849297 Seca6g02721 6 91847279 91849297 ECH