Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02718 ATGTTCTTCCTTCTTCCCCCAAACAAACAGAACACTTTCTTCTCGCACGTGCGATATCTGTTTCTGGTTTTTTCTTGTGTTTTCGTGATGGATTCATGTCGTGATTCAGGGGTTAACCCTGATGATCATCATGCTGAGTTCTGTTACCAGGTGGAGCTCATCAAAGACGCTTCCTTTTCTGTTGATAATGTTGAGCGTGTTCTTGATCACGTTCACAAGTTTTTTGAAGAGCACCCCACTACCGAAACCACGATTAGGAATGCTGATATTGTTCTGTTCATAGTGACCCACCTTGGTAATAATTCTAAAGCTATGGGGTCACGGTTGAGAAGCAAAGCTCTCATGACTTTACTCAGCATGGCCAAGGATGAGGAAAGCAGGAAAATAATGCTTGAAGGGGGTATCACTAGACTGGCTGTACATAGTCTTCTTGGGAGCTCTGAGAAAGAGAGAGAGTATGCTGTCAAGTTATTACTAGAGTTCTGCAGTGATGAAGATTGTTGCATAAGAATTGCTTCAGAGAAAGGTGCTTTAGTTCTTCTCTCAAGTATGACAGGAAATCAAGAGTATCCATCTTTGTCCAATTTATCTGAGGAAGTCTTAAAGCAGATAGAGAGGGTGGAGGATAATGTTCAGCGTTTGGTAGCAGCTGGAAGAATGGAACCATTACTTCTACGGTTACGTGATGGTTCTGATGGTGTAAAGATAGAGATGGCTTCTCTAGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCCAGGCAAAGTGCCAGAGTATTTGTTGAATTGCTTTCTAAACAAGAAGGAAGGGGACCAAGTTTGCAAGCATTATATAACTTGTCTCTTTTGGATGACAATGCAACCATCCTTGTTGAGTCTTCAGTCCTTCCATCTCTTATAGAAGTTCTTTTTGATGAACAGAACCCTTCCTATGAGCTTAAGTTATTAGCTGCTTCAACAATCGCAAATATAGTAACTAAGCCAGGGAGTTGGGAATTAGCATCTGCTGACAACAATGGAAATCCAATGCTGTCAGAAAATATTGTGTTCAGACTTTTGGGGCTTTTAAACTGTTCGTCCTCTCAGTGTCAAGTGATTGTTCTTCGCATACTTTGTGGAATTACATCATCTCCTCGGGCATCAGAGTTAGCAGCAATTCACATCATGTCCGGGGATGGTTTTAGAATAGTCACACCATTTCTTCAACACCCAGAAGTTGAACATAGAGTGTTTGCTTTCAAGCTTACTAGACTGCTATCTGAATGGCTTAGTCAAGACATTGCAAATGAGCTGAGACTTTCAAACAAACTTAGAATGCTTAAAGAAAAACTGTTAGATAACCAATCTACAAAAGATGAGAAATCAGATGTAGCACAGATACTTGCCAATCTTCCCCTCTCAGAGGATGAAGTGCAGACACTTTTAGGAGATGACTTTGTAAAATGGACTGTTGTTACTCTTAAGAATCAGCAGCGTGTTTCCAATTCAAGGTTTTCACATACAGCATCAGGCATGCAGGAAGGCCTTCTAGGTCTCTTGCTTCACTTCACTAGAAACCTTGATCAGCAATCACTTAATGTGGTTGGAGATAATCATCTTATGGAAATTTTCTGTGACCAGCTGGATTATACTTCAAATCCAAAGGTAAAACGACTTGCTGCTGTTGGATTGAAACACTTATCAGAATTTGGAAGATCAGTTACTGCTAAGGACACTGCAATGCCATCTCCGAGTGGGTTCTGCTCTTCCCTGCTGCTCATGTGTGGGAGGGCCTCTAGTCAACCTTCCACATGTCCCATTCACAATAGCCACTGTGAGGAAGATAGTGAATTGTGCCTGCTCAAAAGCAACTGTATCAAACCCCTGGTTGATATCCTCAGTGACAATGACACTAATGTGCAGCTTGCTGCAGTGGAAGCACTATCTACTCTAGTATTAGATTACACATCTCCCAGTTTCAAAAGAGCTGTTGATGAACTTGAGCAACTGGGTGTGGTTGATTCTTTGATCACACTTTTTGCTGAAGTTAGATCTGAGGAGCTTCAGGAGAAAACAATTTGGATAATAGAGAAGATTTTGAGAGTGGATAATCTCAGCCATCAGCATGCACTTAATCAGTCTCTTGTGAGAGGCTTGGTTGAAGCCATTACTCATGGGAATGCCAATACAAAGAAACATGCTCAAGATGCTCTGATCCTCCTAAAGGAGTTATCAGGTGTTAGTGGAAGGGCATCAAGTCAATCTCAAGCTCAGAGATAG 2268 0.4145 MFFLLPPNKQNTFFSHVRYLFLVFSCVFVMDSCRDSGVNPDDHHAEFCYQVELIKDASFSVDNVERVLDHVHKFFEEHPTTETTIRNADIVLFIVTHLGNNSKAMGSRLRSKALMTLLSMAKDEESRKIMLEGGITRLAVHSLLGSSEKEREYAVKLLLEFCSDEDCCIRIASEKGALVLLSSMTGNQEYPSLSNLSEEVLKQIERVEDNVQRLVAAGRMEPLLLRLRDGSDGVKIEMASLVGRMTLTNSCKEQIARQSARVFVELLSKQEGRGPSLQALYNLSLLDDNATILVESSVLPSLIEVLFDEQNPSYELKLLAASTIANIVTKPGSWELASADNNGNPMLSENIVFRLLGLLNCSSSQCQVIVLRILCGITSSPRASELAAIHIMSGDGFRIVTPFLQHPEVEHRVFAFKLTRLLSEWLSQDIANELRLSNKLRMLKEKLLDNQSTKDEKSDVAQILANLPLSEDEVQTLLGDDFVKWTVVTLKNQQRVSNSRFSHTASGMQEGLLGLLLHFTRNLDQQSLNVVGDNHLMEIFCDQLDYTSNPKVKRLAAVGLKHLSEFGRSVTAKDTAMPSPSGFCSSLLLMCGRASSQPSTCPIHNSHCEEDSELCLLKSNCIKPLVDILSDNDTNVQLAAVEALSTLVLDYTSPSFKRAVDELEQLGVVDSLITLFAEVRSEELQEKTIWIIEKILRVDNLSHQHALNQSLVRGLVEAITHGNANTKKHAQDALILLKELSGVSGRASSQSQAQR. 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02718 755 SUPERFAMILY ARM repeat 277 565 IPR016024 -
Seca6g02718 755 SUPERFAMILY ARM repeat 86 737 IPR016024 -
Seca6g02718 755 Gene3D - 50 568 IPR011989 -
Seca6g02718 755 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 60 745 - -
Seca6g02718 755 SMART arm_5 608 649 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 656 697 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 206 247 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 524 565 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 248 285 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 123 163 IPR000225 GO:0005515
Seca6g02718 755 SMART arm_5 286 329 IPR000225 GO:0005515
Seca6g02718 755 Pfam Armadillo/beta-catenin-like repeat 616 647 IPR000225 GO:0005515
Seca6g02718 755 Gene3D - 603 752 IPR011989 -
Seca6g02718 755 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02718 Seca-Chr6 91806986 91811227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02718 103 745 U-box Gene Family AT1G76390 28.073 4.59e-56 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02718 - - gmx:102659945 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02718 6 91806986 91811227 Seca6g02718 6 91806986 91811227 ECH