Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02708 ATGACAATGGGGGGCATGGAGAATTCTTGGAGCAGGAATCGTAAAAGAGGGCTCACGCGAAGAAAGCTTCAAATCAATGAAAGGGTGGAGGTGAGGAGTTTAGAGGACGGCTTTCTGGGCTCATGGCATCCGGGGATAGTTATCCATTGTGGGAAGCTGGAGCGCTCTGTCAGATATGATAATCTCTTACATGATAATGGGTTGGATCATCTTGTGGATGTAGTGAGAGTTTCAAATGCTTTGGATGGGAATACTAGTTACTCAGATGTCAATAAACGTGGGTTGATTAGGCCACTGCCTCCTTTGATTGATTTTGAGAAAAAGGATCTTAAATTTGGTCTGTGTGTTGATGCAAGCCATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGATGAAATGGAGGAAAGGAACATATTTTTCCCAGATTTGGGTGATGAAATGAAGATTGGAGTTCATCAACTGCGGATTACACAGGACTGGGATGAAGTTACTGAGACGTGGGAGCGACGAGGGAATTGGGTGTTTCTTGAATTGATTGAAGAGCTAGAGAGGGCATCATATGTTGCAGTTTCAGCAAAGCAAGTTTGGTATGATATACGGGAAAGAAATGATTTTGGCTTGATTGGGGATTGGACATTTAATTTTAAAAACTTTTTGAAAGACATGTTAATGGAGGTAGTTAGTGACTATTGGACTCTTACAGTAAAAGAAGTTTTCTCAGCCTTGGACCTTCCAAGGGATTCATTAAATGAAACAGTGGAATCAGTTAAACTTATGCCTAATGTTAGCTTAAACACAACCTTCCCTGAAAAGGAGATTTTTGAGCAGAAAGAGCCTGTTCTTCCTGTTAGAAAGGAGTTACCTAAGTTTCAGAATAAAATTTCCTGCAATGGTGCTGGCGAAGTGGTTTCAGGTGGTATCTGTTTTGAAAAAAATAGGAAAAACAGATCGCCAACTTCTTTAAATTCCAAGTGGATACCTCTGAAATTGTCTGCAATTGAATTCTGTCCTGATGCTTGTAAGCAATATGCACTTGCTAGTAAAAAGGAGAATAGGGAATTTTGGAAGGATAAAGCAAGACAACATCTTGCATATCTTGGATGGAAAATTGAGTGGTTAAAAGGCAAATCTGGTGCTAAACATTACAGGTACACTTCGCCTGATGAACAGGGCCGGAAGAAGGCTTACTTATCACTCATTGAACTTTGTAGATTTATGCAAAGGGAATCCAACATGAACTCTTCACTGTCCCAAAATGATGAGAGTATAATGCACCCTACAGTTGACTGTCATCTTTCACATGTGCCTAATCTATCAGAAAAGATTCAGGACCTAGATATTTGTCCTCCAATTGAGCAGCCTCCTACTGTGGCAGTTGTAGATGAACCAGTGTATTGTCCTCAGGCAATGCAAAAGGAATCCAACATAAACTCTTTGCTGTCCCAAAATGATCAGAATATAATGCATCCTACAGATGACTGTCATCCTTCACATGTGCTTCTTAATCCATCAGAAAAGATGCAGCACCCAGATATTTGTCCTCCAATTGAGCAGCCTCCTGCAGTTGTAGATGAACCAGAGTATTGTCCTCAAGCTCTTGTGGAATATTACTCACATGCATTCGTGAAGCACTGGTCTGATAAAAGAAAATGGATATGCAAAGCAAAGAAACATCTGTTAGCAGAAGGATGGATATTTGACTATCCCCCTCCACATAATAAAAAAAGGGGAATTATATACATATCTCCTCAAAGTCGGAGATTCAATACACTCCATGCAGCATGCAGATTTTGTATCGAAGTAGGTATTCCTAAGTGGAGTATTTCTGGCATGGAACCTATAAATGCCTCAGCCATTAATGAGGAAAATGTTGATCAGGTCTGTAGTGGTGATTTATTACACAGAGTATCTCAACTGCTTCCACAGGAAGGTGATGGTGCTGTGAATGGATCAACCGCAAATCGGAAGCGGAAACGCCTAAGGAAATCAAAGGCCAGCCTACCTAAGTGCCAAAGCAATGGATTATCTCTACGGGTGTTACGATCAAGTAAAAGGGTGCAAAATGTGTCTGCCCCTTCTCTGGCACACCATAAACCTTTAAATGTTTTGTCTTGGTTGATAGACAGCAACATTGTGTTACCAAGATGTAAGGTTTATTATCAGGCAAAACACAGGCACCATGCTTTGGCTGAGGGGAAAATAACTCGTGACGGAATCAAGTGTAATTGTTGCATGAAAATATACGGTCTTGCTGGCTTTGAAAAGCATGCTAGCGGCAGTAGTACCCAAAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGATCGCTCTTAGATTACCAGAAACAAATAATGCAAGATCACAAGACAAGGGAGACTATGGAAAAACCATTAAGTAATTTGTGTCATGGGGAGAATGACTACCTTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCGTCTTCATTTCATAAAATGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCTTGTCGTTGCCGGATTTGTGGCCAAAGCAAAATCAACGGAGATGAGGATGGACATTTCCTTACTTGCATTCAGTGTGAACATAAATATCATATTAGGTGCCTGAAAAATAGAGCTGTAGATAGATCAAGAAGATATCTGGAAAATTGGTTCTGTGGAAGAGACTGTGAAAAGATATATGTAGGCCTTCATAAACTATTAGGAGAGCCAGTTTCAGTGGGCGAGGACAATCTAACTTGGACATTGATGAAGTTCATCAACCCTGAGAGTTGTAATCTTGGCAGTACTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCAATGATGCATGAATGTTTTGAACCCCTAAGGGAACCTTTATCTAGCAGAGATCTCATGGAAGATGTTATATTCAGCAGATGGTCAGAACTTAATCGGTTAAACTTCCAAGGTTTCTATACTGTACTTCTGGAGAGAAATGACGAACTGATTAGTGTGGCAACTGTTAGGGTCTTTGGAGAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAGTATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTTGAAAAGAAGCTCATGAAATTAGGAGTGGAGAGGCTTGTTTTGCCTGCTGTTCCAAGCGTCCTCGACACATGGACTGGCTATTTTGGCTTTACAAAGATGACAAATTTTGAAAGATCACAATTTCTGGACCATACTTTCCTAGATTTTCAGGATACCATCATGTGCCAGAAGTTGTTGATGAAGATTCCGTCTCCAGATTCAGTTTTGTCAATAGAGTTCCAACAAAAACATGATGTTTTCTCTGGAAGTTGTAGTGCTCATTTTGATAAGTCTAGTTCTGTATCTGAAGTATATCAAGCAGGAGAGATTGACACAGGAGGGATGCTGGATCAACAAATGGGGGATACTAATGAAGGCAACAGTGATCATCCTGGTACTGATGCCATTGAACCTATCACCATGGTGAAGCAACTAAGACCTGAGGATCAAGAGTGCCATAATGGAACATCTCCACAGTTCTCTCTTGTAAAGCCATCTGACAGGTATAATGGCCAATGCTACAAAAGAAGGAAAGTGAGAATGCCATTATGA 3681 0.4059 MTMGGMENSWSRNRKRGLTRRKLQINERVEVRSLEDGFLGSWHPGIVIHCGKLERSVRYDNLLHDNGLDHLVDVVRVSNALDGNTSYSDVNKRGLIRPLPPLIDFEKKDLKFGLCVDASHQEAWWEGVIFDHCDEMEERNIFFPDLGDEMKIGVHQLRITQDWDEVTETWERRGNWVFLELIEELERASYVAVSAKQVWYDIRERNDFGLIGDWTFNFKNFLKDMLMEVVSDYWTLTVKEVFSALDLPRDSLNETVESVKLMPNVSLNTTFPEKEIFEQKEPVLPVRKELPKFQNKISCNGAGEVVSGGICFEKNRKNRSPTSLNSKWIPLKLSAIEFCPDACKQYALASKKENREFWKDKARQHLAYLGWKIEWLKGKSGAKHYRYTSPDEQGRKKAYLSLIELCRFMQRESNMNSSLSQNDESIMHPTVDCHLSHVPNLSEKIQDLDICPPIEQPPTVAVVDEPVYCPQAMQKESNINSLLSQNDQNIMHPTDDCHPSHVLLNPSEKMQHPDICPPIEQPPAVVDEPEYCPQALVEYYSHAFVKHWSDKRKWICKAKKHLLAEGWIFDYPPPHNKKRGIIYISPQSRRFNTLHAACRFCIEVGIPKWSISGMEPINASAINEENVDQVCSGDLLHRVSQLLPQEGDGAVNGSTANRKRKRLRKSKASLPKCQSNGLSLRVLRSSKRVQNVSAPSLAHHKPLNVLSWLIDSNIVLPRCKVYYQAKHRHHALAEGKITRDGIKCNCCMKIYGLAGFEKHASGSSTQRPSASIFLEDGRSLLDYQKQIMQDHKTRETMEKPLSNLCHGENDYLCSVCHYGGELILCDQCPSSFHKMCLGLEDIPDGDWFCPSCRCRICGQSKINGDEDGHFLTCIQCEHKYHIRCLKNRAVDRSRRYLENWFCGRDCEKIYVGLHKLLGEPVSVGEDNLTWTLMKFINPESCNLGSTKSDLLAESYSKLNVALSMMHECFEPLREPLSSRDLMEDVIFSRWSELNRLNFQGFYTVLLERNDELISVATVRVFGEKVAEVPLVGTRLQYRRLGMCRILMNELEKKLMKLGVERLVLPAVPSVLDTWTGYFGFTKMTNFERSQFLDHTFLDFQDTIMCQKLLMKIPSPDSVLSIEFQQKHDVFSGSCSAHFDKSSSVSEVYQAGEIDTGGMLDQQMGDTNEGNSDHPGTDAIEPITMVKQLRPEDQECHNGTSPQFSLVKPSDRYNGQCYKRRKVRMPL. 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02708 1226 SMART PHD_3 854 906 IPR001965 -
Seca6g02708 1226 SMART PHD_3 812 853 IPR001965 -
Seca6g02708 1226 Pfam Tify domain binding domain 735 786 IPR032308 -
Seca6g02708 1226 ProSiteProfiles Zinc finger PHD-type profile. 810 855 IPR019787 -
Seca6g02708 1226 SMART agenet_At_2 21 104 IPR014002 -
Seca6g02708 1226 SMART agenet_At_2 108 165 IPR014002 -
Seca6g02708 1226 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 948 1115 IPR000182 GO:0016747
Seca6g02708 1226 MobiDBLite consensus disorder prediction 646 669 - -
Seca6g02708 1226 SUPERFAMILY FYVE/PHD zinc finger 792 853 IPR011011 -
Seca6g02708 1226 Gene3D - 953 1113 - -
Seca6g02708 1226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 855 909 IPR013083 -
Seca6g02708 1226 PANTHER PHD FINGER PROTEIN 12 488 1195 IPR042163 GO:0003714|GO:0045892
Seca6g02708 1226 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 988 1090 IPR016181 -
Seca6g02708 1226 CDD Tudor_Agenet_AtDUF_rpt1_3 23 101 - -
Seca6g02708 1226 Pfam Agenet domain 27 101 IPR008395 -
Seca6g02708 1226 CDD NAT_SF 1004 1064 - -
Seca6g02708 1226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 854 IPR013083 -
Seca6g02708 1226 Pfam PHD-finger 813 854 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02708 Seca-Chr6 91666003 91675192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02708 32 446 PHD Transcription Factor Family AT5G58610 35.763 1.11e-62 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca6g02708 Agenet 2.8e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02708 - - cam:101498411 1459.89