Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02680 ATGCCAACCCAATCAGACTCACCCAGCAAGCCTATGAACAACAACAACACACTGAGTCAAATGTTTCAGAACATATTCTCAGACAACAGTAACATCATGCTTGCAGCTATCATTTCCTTACTCTTAGTTATCCTCTTTGTTCTGCTACTCCATCTCTATGCTAAATGGTTCTTGGCTCAAGCACATGCACAGGCACAAGCCCGGCGGCGCCGTCGCCGGCGAACCACCGTGACCGTCTCCGATGTCCTTGGTCCTGCCAGGTTCCACCACTTTCACAGCTTCAACATAGAAGACTCTCCCCTCTCTAGCTCCCACACAAAAGGGCTTGATTCTGCTATCATTGCTTCTATTCCACTGTTCATCTATGAAGATGATGAACAGAGCAAGGTGGAACATGAGCTTGAATGTGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTACCAAAATGTGGGCATGGTTTTCATGTTGGGTGCATTGACATGTGGTTGAGTTCACATTCCAATTGCCCAATTTGTAGGGCTCCAATTGTAGGTGGTGGGGTTGTTGAGAATGATTCTTCAGCTGTTGGGGATGATGGTTCTGCTTTTGTTGAGATTGTGATTGATGATACTCCAAGTCCTGAGATTAGAGAGAGTGAGCATGGGAATGATAATGGAGGGGTGGTGAGTGATTCTAATTCTATGTCAGAAACCTCATCCTCATTGTTTGGGTGCTCTTTGAAGACAATGCTGAGCAAAGTTTTCCCATCTTCCAATGTAAATGAATTACATGTTTGA 792 0.447 MPTQSDSPSKPMNNNNTLSQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPLSSSHTKGLDSAIIASIPLFIYEDDEQSKVEHELECVICLSAFEDGEMGRCLPKCGHGFHVGCIDMWLSSHSNCPICRAPIVGGGVVENDSSAVGDDGSAFVEIVIDDTPSPEIRESEHGNDNGGVVSDSNSMSETSSSLFGCSLKTMLSKVFPSSNVNELHV. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02680 263 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Seca6g02680 263 SMART ring_2 136 177 IPR001841 -
Seca6g02680 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 188 - -
Seca6g02680 263 MobiDBLite consensus disorder prediction 211 235 - -
Seca6g02680 263 Pfam Ring finger domain 135 178 IPR001841 -
Seca6g02680 263 SUPERFAMILY RING/U-box 126 182 - -
Seca6g02680 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 182 IPR013083 -
Seca6g02680 263 CDD RING-H2_EL5-like 135 178 - -
Seca6g02680 263 FunFam RING-H2 finger protein ATL1 93 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02680 Seca-Chr6 91068638 91069468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02680 4 210 Rapid Response to Elicitors AT3G16720 34.783 7.68e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02680 - - lang:109329145 319.316