Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02679 ATGGCCTCTGATCAACAACATCGGTATGTGCTTATTCCTCAGTGGCACTTCAATATGCTAAATAGGAATACCTCAAATTTCCACTTCCTCCAAAGCCAAAGCCTATTCCTCCTCCTATGGTTCATTCTCATCATCATTTTTTTCCCTTCATTGTTCCTCTGTATCTACTCCTGTCGCCGTCGCTTATCACAACAACAACCAACAACCACCACCATAGTGATCCCTGATCCCCACCTGCCACTGCCAGATCATCAATCGGTTAGAGTTGAGTACTTCCCATCTTCAACCACCAAAAATAAGAGCTTTGAGAAGGAATGCTGCATATGTTTGAGTGTTTTTCAAGATAATGAAAAGCTGAAGGTGTTAACAGAATGTCAACATGCTTATCACTCTGAATGCTTGGATAAGTGGCTTAGTACACATCCTACCTGCCCTCTCTGCAGGGCCTCTCTCCATGTTAGTAATTCCTTGAAGAAATAG 480 0.4271 MASDQQHRYVLIPQWHFNMLNRNTSNFHFLQSQSLFLLLWFILIIIFFPSLFLCIYSCRRRLSQQQPTTTTIVIPDPHLPLPDHQSVRVEYFPSSTTKNKSFEKECCICLSVFQDNEKLKVLTECQHAYHSECLDKWLSTHPTCPLCRASLHVSNSLKK. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02679 159 SUPERFAMILY RING/U-box 100 153 - -
Seca6g02679 159 SMART ring_2 106 147 IPR001841 -
Seca6g02679 159 Pfam Ring finger domain 104 148 IPR001841 -
Seca6g02679 159 PANTHER RING FINGER DOMAIN-CONTAINING 35 151 - -
Seca6g02679 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 156 IPR013083 -
Seca6g02679 159 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02679 Seca-Chr6 91035196 91035675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02679 25 151 C3H Transcription Factor Family AT5G47610 33.588 5.29e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02679 - - gmx:102667569 161.384