Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02655 ATGCAATCAAATATTGCCGCTCATATATCACCTTGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTGAACGTGTTGAAAGTGATCCCGGCTGGATCTTCTAATGGCGCAAAGAAGGCATTTTGCTGGAATGTGATAATTGATTTTCACTTTTTATAG 195 0.4103 MQSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRLNVLKVIPAGSSNGAKKAFCWNVIIDFHFL. 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02655 64 SUPERFAMILY Nucleic acid-binding proteins 3 47 IPR012340 -
Seca6g02655 64 Gene3D - 1 56 - -
Seca6g02655 64 Pfam Ribosomal protein S17 2 39 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca6g02655 64 ProSitePatterns Ribosomal protein S17 signature. 18 30 IPR019979 GO:0003735|GO:0005840|GO:0006412
Seca6g02655 64 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 2 48 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02655 Seca-Chr6 90472241 90474864 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02655 3 53 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 86.275 1.21e-26 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02655 K02949 - pvy:116138039 99.7525