Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02651 ATGCAATCAAATATTGCCGCTCATATATCACCTTGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTGAACGTGTTGAAAGTGATCCCGGCTGGATCTTCTAATGGCGCAAAGAAGGCATTTGCTGGAATGTGA 171 0.4444 MQSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRLNVLKVIPAGSSNGAKKAFAGM. 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02651 56 SUPERFAMILY Nucleic acid-binding proteins 3 44 IPR012340 -
Seca6g02651 56 Pfam Ribosomal protein S17 2 39 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca6g02651 56 Gene3D - 1 55 - -
Seca6g02651 56 ProSitePatterns Ribosomal protein S17 signature. 18 30 IPR019979 GO:0003735|GO:0005840|GO:0006412
Seca6g02651 56 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 2 48 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02651 Seca-Chr6 90372073 90374692 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02651 2 56 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 81.818 2.38e-28 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02651 K02949 - ini:109159472 103.219