Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02625 ATGACTTCTGAAAATATTGATTGGAAGCCAAGAGTTGGTATGGAGTTTGAAAATGAAGAAGTGGCATGGGAATTTTGGTGTGAATATGGTAAGAAAGCTGGTTTTGGAGTTAGAAAGCAATACTCTAATAGGCGAAAGGGAGATGGTGCTATAACTTCTTGTAGATATGTTTGTTACAAGGAAGGGAATCGAAAACTCGATAAAAGAGATGGACAAGTGACCAAGCATAGAGTCGAGACCAGAACTAATTGTTTTGCAAGAGTTGGAGTGTCTTTGTCAAAGAATGGAAAAACAACTCACATGCTTGCCTCACATCATAAGATAACTGAAGTGCAAGCCTATGGGATTGATTTGGCTGAAGACTCTAGACTACGACAAAAGTCATCATTTCAGTTGATGAGCACACATGTCGAGCATAGGGCTAATATTGGATATACTCGGTTGGACGCAAAGAATTACCTTAAGGCAAAAATACAAAGAAATATGGTGTACGGGGAAGCAGGTTGTCTAATGCAATATTTTCAGCAGCAATTATTAGTGAACCCATCATTTTTCCATAGATTCCAAATGGATGTCGATGAGCAAGTCACTAATGTATTTTGGGCTGATGCGAAAATGGTGTTGGATTATGGGTATTTCGGTGATGTCTCTTTGGGCACTACATATTGTACTAATCGAGCAAATAGGCCTCTTGCATTGTTTTCTGGTTTTAACCATTACAGGGGTATAGTCATTTTTTATGCAGCTTTGTTGTATGATGAAACAACAGAATCTTTTAAATGGTTGTTTGAGACATTCTTGGAAGCACATAACCAAAAAAGGCCTAAGACTATTTTCACTAACCAGGACCAAGCAATGGCCAAGGCACTTGTTGAAGTGATGCCCGAGACACACCATGGCTTATGTACTTGGAACTTGATGCAGAATGGAATTAAGCACCTTGGCAATTTGATGAAAGGGGGAAGTCATTTTTTAAGAGATTTCAAGAAATGCATGTATGAATTTGACACTGAGGATGAGTTTGAGGAGGCTTGGCCCAAATTGATCACAAACTACAATGTTCAAGAAAATAATTGGATTAAATCAATTTATGTCATAAAAGAAAAATGGGCCTCATATTATATGAAGCAAGCATTCACACTTGGGATGCGAAGTACACAACTAAGTGAAAGCTTCAATTCAGATTTCAAAGCTTGTATGAAGTCGGATGTCGATGTAAAGCAATTCTTTAGACACTTTGAAGGGGTTGTTGAGGAGAAGCGATACAATGAGCTAGTTTGTGAGTATGACTCCCGCCATAAGCTAGTAATGTTGCGATATGAGATGTCTCCAATATTGTTACAAATGGGCAATATTTACACTCATACTGTGTTTGACTTATTCCAACAAGAATTTGCATTATTCTTAGCCTCTTACATATCAAAAAGAGATGAATATTCCCCTTTGTTTGAATACATCATCACAAGGATGAACCATGATGGATGTTGGAAAGTATTATTTGATCCTGCATCAGTTTCTATATCTTGTAGTTGTAGAAAATTTGAGACAATTGGCATACTTTGCTCCCATTCATTGAAAGTGTTTGATTCAAATGATGTAAAGGTTGTTCCTGAAAAATACATTCTCAAGAGGTGGACAAGAGAAGGTCGCAGTGGCATTGTACATGATGTTAGAGGAAAAGAGGTTGAAGAGGATCCTAGACTCTCTACCACACGGCGGTATCGACAGTTAGCATCTAAATTGATTAGGGTAGCATCTGATTTATCTCCATGTGAAGAAGAGTGTCAACTAGTAGATAAAAGTATAGATGTTGTGTGTAAGCAAATAAAGGAGCTTCGCTTACGAGCACAAAGCATTGACAAACATGATGGTGATGCCTCTACATTGGTGGTTAGGGATGGTACACAACCTAAGGGGTTCAAGCAACGACCTAACATAAAGAGGCACAAGCAAACACGATTGAAAAGTTGGGTTGAGTTGCAAGGAAAGAAGAAAAGAAAAGCTCTAGCTGGAGGTCAATCACAAAGCCAAGCATCTCAGGTATATATTTATGCATATAACAATAACAATAATTTCATCATTCTTTTTATAATCATTTTGACAATATTCTGTGAACACTTTAGGATTATGAATCAAGAAATAGTGAACAATATGAAATCCATTCTTCTGCACCTCCAAGTCTTGGTCCCCCTTAAACATTTGAGAACCAATTTAGTTTCACAGCATTCTTGA 2232 0.3759 MTSENIDWKPRVGMEFENEEVAWEFWCEYGKKAGFGVRKQYSNRRKGDGAITSCRYVCYKEGNRKLDKRDGQVTKHRVETRTNCFARVGVSLSKNGKTTHMLASHHKITEVQAYGIDLAEDSRLRQKSSFQLMSTHVEHRANIGYTRLDAKNYLKAKIQRNMVYGEAGCLMQYFQQQLLVNPSFFHRFQMDVDEQVTNVFWADAKMVLDYGYFGDVSLGTTYCTNRANRPLALFSGFNHYRGIVIFYAALLYDETTESFKWLFETFLEAHNQKRPKTIFTNQDQAMAKALVEVMPETHHGLCTWNLMQNGIKHLGNLMKGGSHFLRDFKKCMYEFDTEDEFEEAWPKLITNYNVQENNWIKSIYVIKEKWASYYMKQAFTLGMRSTQLSESFNSDFKACMKSDVDVKQFFRHFEGVVEEKRYNELVCEYDSRHKLVMLRYEMSPILLQMGNIYTHTVFDLFQQEFALFLASYISKRDEYSPLFEYIITRMNHDGCWKVLFDPASVSISCSCRKFETIGILCSHSLKVFDSNDVKVVPEKYILKRWTREGRSGIVHDVRGKEVEEDPRLSTTRRYRQLASKLIRVASDLSPCEEECQLVDKSIDVVCKQIKELRLRAQSIDKHDGDASTLVVRDGTQPKGFKQRPNIKRHKQTRLKSWVELQGKKKRKALAGGQSQSQASQVYIYAYNNNNNFIILFIIILTIFCEHFRIMNQEIVNNMKSILLHLQVLVPLKHLRTNLVSQHS. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02625 743 SMART 26again6 507 534 IPR006564 GO:0008270
Seca6g02625 743 Pfam SWIM zinc finger 505 529 IPR007527 GO:0008270
Seca6g02625 743 Pfam MULE transposase domain 218 309 IPR018289 -
Seca6g02625 743 Pfam FAR1 DNA-binding domain 24 97 IPR004330 -
Seca6g02625 743 ProSiteProfiles Zinc finger SWIM-type profile. 496 532 IPR007527 GO:0008270
Seca6g02625 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 608 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02625 Seca-Chr6 89979901 89982186 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g02625 MULE 1.8e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02625 - - mtr:112418135 804.283