Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02622 ATGTTCCTTCAAAGTTCAGGACTTTTGCAAAAGGGGTTGAAAGAAAAGTTGATATATTCTTCAGAAATGCGTGGTCTGAAGCTCACTGAACGTTTCAAGAGCATCCAAGTTCATGCTCTCAGTTCTTCATCAGAAACCAATGGTGGCAGTGGCAGTGGCAGTGGCACTAGCACTAAAGTCACACTGGCTGCCACCAAAACTCAAAACCTTAACAGACACAGAACCATAACATCTTGGTCAAAGCCTAAATCCAGCACCAACAACTCAACCTCAGCATTTGCAAACCTTGTCCCTCGTCAGCTTCCTACCACTGACACCATTGAACCATCCATAGAATCTCACCTTAAACCCATCAATTTTGTAGAGACCTTAGCAGAACTCTGTCACCGCATAGAGTGCTGTTCTTCACAGTCCGAGAAAGCATCACTTTATGTGGAACAGTTCTCTCTCTTGCGCAGCCTCGGTGACCAGAAGCTACTCCGAAGATGTCTCAGGACAGCGCGCCAGAACGCTGAGGATGTGCTCTCCAAGGTTGTGCTCTCTGCATGGTTGAGGTTTGAGAGAAGGGATGATGAGCTTGTTGATGTGTCTTCAATGGACTGTGGTGGGTACGTTCTTGAGTGCCCAAAGAAGAATCTGGAAAACGGGTTTAGTCCTTGTTCAGTTAATGATCGCTGCCAGTGTCAGCAAGAGTCAAATCAGGAAATTTGCACTGAGACTGAGAGTGTGTGTTTGCCAGATGAGGAAAGTGATGTTTTGTTTTGTGTTGGGAATGAAGAAATCAATTGTGTTAGGTGTAGGATTGCTGCACTTTCAGACCCATTAAATGCCATGCTCTATGGTGGCTTTGCTGAGTCCAAAATGAGGAAGATTGATTTCTCAGGAAGTGGGATATGCCCAAAAGGGATGAGGGCTGTGGAATTTTACAGCAGGAACAAAAGATTGGACCTTTTCTGTCCCATGACTGTTTTGGAGCTTCTCTCTTTTGCCAATAGGTTTTGTTGTGAAGAGATGAAATCTGCTTGTGATGCCCATTTGGCTTCCATTGTTGATAATATTGAAGATGCATTGATACTAATTGAGTATGGATTGGAAGAGGGAGCTACCCTTCTAGTAGTATCTTGCTTACAGATGATGCTTAGGGAGCTTCCTAATTCTCTGTATAATTCAAATGTGGTAAAAATCTTCTGTAGTTCTGAGGCAAAGGAAAGATTGGCCATGGTGGGGTGTGCCTCTTTCTTATTGTACTATTTCCTGAGCCAGGTGGCTATGGAGGAAAACATGGCATCTAAAACAACAATGATGTTATTGGAGAGACTGGGGGAGTGTGCTACAGAAAGATGGCAGAAAGCCCTTGCATTCCATCAATTAGGGTGTGTTCTGCTTGAAAGGAAAGAATATAAAGATGCTCAGCATTGTTTTGAGGCAGCAGTTGAGGCAGGTCATGTTTATTCTATGGCTGGTGTGGCCAGAACCAAGCACAAGCAGGGTCAACCATATTCAGCATATAAGTTAATTAGTTCTCTCATATTTGAGTATAAACCAGCAGGGTGGATGTATCAGGAGAGAGCACTGTACAATATGGGAAGGGAAAAGAGTTTTGATTTAGATGTTGCAACTGAATTGGATCCCTCCCTTTCATATCCATATAAATATAGAGCCCTGGCAAAGGTGGAAGAGAAGCAGATAAAGGAAGGAATTATGGAACTAGATAAGTTAATTGGATTTAAGCTCTCCCCTGATTGCCTAGAATTAAGGGCTTGGTTGTATATTGCACTTGAGGATTATGGCAGTGCCATGAGAGATATCCGGGCATTGTTAACCATAGAACCAAATTACATAACTTCACATGGGAAGATCAAAGGGGAATACTTGGTCCAACTTTTAGGCCGTGGAATTCAGAAGTCTCAGGCTGAATGCTGGATGCAATTATACCAACAATGGTCTTCTGTAGATGATATTGGTTCTTTGGCTATCATACATCAGATGCTAGAGAATGAGCCAGGAAAGAGCCTCCTAGAGTTTCGTCAGTCTCTACTCCTCTTGAGGTTAAACTGTCAAAAGGCTGCAATGCACAGTTTGAGGATGGCCAGAAACCATTCTAGTTCGATGCAAGAAAGGCTAATTTATGAAGGATGGATTCTATATGATACTGGTTATCGTGAAGAAGCTTTAGCAAAGGCTGATAGATCCATTACAATTCAGAGATCATTTGAAGCCTTTTTTCTAAAAGCATATGTATTAGCAGATACAAGTCTGGATCCTGAATCTTCTTCTTATGTTATCCATCTTCTTAAAGAAGCACTTAAATGTCCTTCAGACGGTCTTCGCAAAGGACAGGCATTGAATAACTTGGGGAGCATTTATGTGGATTGTGGTAAATTAGAACTTGCAAAGGAATGCTACAACAATGCTCTTGCAATTAGGCATACTAGAGCTCATCAAGGTCTGGCACGTGTATATCATCAGAAAAATCAAAGAAAAGCTGCATATGATGAGATGACCAAGCTAATTGAGAAGGCAGAGAGCAATGCCTCAGCATATGAGAAAAGATCAGAATACTGTGACCGCGAAATGGCAAAGGCTGATCTTGATGTTGCAACACAACTTGATCCTTTAAGGACATACCCCTATAGATACAGGGCAGCAGTGATGATGGATGAGCAAAAAGAAACTGAAGCTGTAGAAGAACTCACCAAGGCCCTAAAATTCAAGCCTGATGTACAAATGCTTCATCTGCGAGCAGCATTTTATGAATCAATGGGAGACTTATCCTCTTGTCTTCAAGATTGTCAAGCAGCTCTTTGTTTAGACCCAAACCATGCAGGCACACTTGAACTGTATCGAAGGAACCAAAAGCTGAACTATTAA 2871 0.4222 MFLQSSGLLQKGLKEKLIYSSEMRGLKLTERFKSIQVHALSSSSETNGGSGSGSGTSTKVTLAATKTQNLNRHRTITSWSKPKSSTNNSTSAFANLVPRQLPTTDTIEPSIESHLKPINFVETLAELCHRIECCSSQSEKASLYVEQFSLLRSLGDQKLLRRCLRTARQNAEDVLSKVVLSAWLRFERRDDELVDVSSMDCGGYVLECPKKNLENGFSPCSVNDRCQCQQESNQEICTETESVCLPDEESDVLFCVGNEEINCVRCRIAALSDPLNAMLYGGFAESKMRKIDFSGSGICPKGMRAVEFYSRNKRLDLFCPMTVLELLSFANRFCCEEMKSACDAHLASIVDNIEDALILIEYGLEEGATLLVVSCLQMMLRELPNSLYNSNVVKIFCSSEAKERLAMVGCASFLLYYFLSQVAMEENMASKTTMMLLERLGECATERWQKALAFHQLGCVLLERKEYKDAQHCFEAAVEAGHVYSMAGVARTKHKQGQPYSAYKLISSLIFEYKPAGWMYQERALYNMGREKSFDLDVATELDPSLSYPYKYRALAKVEEKQIKEGIMELDKLIGFKLSPDCLELRAWLYIALEDYGSAMRDIRALLTIEPNYITSHGKIKGEYLVQLLGRGIQKSQAECWMQLYQQWSSVDDIGSLAIIHQMLENEPGKSLLEFRQSLLLLRLNCQKAAMHSLRMARNHSSSMQERLIYEGWILYDTGYREEALAKADRSITIQRSFEAFFLKAYVLADTSLDPESSSYVIHLLKEALKCPSDGLRKGQALNNLGSIYVDCGKLELAKECYNNALAIRHTRAHQGLARVYHQKNQRKAAYDEMTKLIEKAESNASAYEKRSEYCDREMAKADLDVATQLDPLRTYPYRYRAAVMMDEQKETEAVEELTKALKFKPDVQMLHLRAAFYESMGDLSSCLQDCQAALCLDPNHAGTLELYRRNQKLNY. 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02622 956 Coils Coil 824 851 - -
Seca6g02622 956 Gene3D Tetratricopeptide repeat domain 856 955 IPR011990 GO:0005515
Seca6g02622 956 SUPERFAMILY POZ domain 241 347 IPR011333 -
Seca6g02622 956 ProSiteProfiles TPR repeat profile. 779 812 IPR019734 GO:0005515
Seca6g02622 956 MobiDBLite consensus disorder prediction 39 58 - -
Seca6g02622 956 Gene3D Potassium Channel Kv1.1; Chain A 218 380 IPR011333 -
Seca6g02622 956 Gene3D Tetratricopeptide repeat domain 436 617 IPR011990 GO:0005515
Seca6g02622 956 SMART BTB_4 250 350 IPR000210 GO:0005515
Seca6g02622 956 SMART tpr_5 451 484 IPR019734 GO:0005515
Seca6g02622 956 SMART tpr_5 580 613 IPR019734 GO:0005515
Seca6g02622 956 SMART tpr_5 779 812 IPR019734 GO:0005515
Seca6g02622 956 SMART tpr_5 908 941 IPR019734 GO:0005515
Seca6g02622 956 PANTHER ETO1-RELATED 22 954 IPR044631 GO:0010105
Seca6g02622 956 SUPERFAMILY TPR-like 763 948 IPR011990 GO:0005515
Seca6g02622 956 Pfam Tetratricopeptide repeat 780 808 IPR019734 GO:0005515
Seca6g02622 956 SUPERFAMILY TPR-like 451 808 IPR011990 GO:0005515
Seca6g02622 956 Gene3D Tetratricopeptide repeat domain 635 855 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02622 Seca-Chr6 89955984 89960114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02622 780 940 Glycosyltransferase AT3G04240 26.316 4.40e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02622 - - gmx:100800616 1580.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02622 6 89955984 89960114 Seca6g02622 6 89955984 89960114 ECH
Seca8g01535 8 26921358 26925222 Seca6g02622 6 89955984 89960114 ECH
Seca8g01535 8 26921358 26925222 Seca6g02622 6 89955984 89960114 PCT
Seca8g01530 8 26769193 26775225 Seca6g02622 6 89955984 89960114 PCT